Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01813 and H281DRAFT_01814 are separated by 110 nucleotides H281DRAFT_01814 and H281DRAFT_01815 overlap by 4 nucleotides H281DRAFT_01815 and H281DRAFT_01816 are separated by 165 nucleotides H281DRAFT_01816 and H281DRAFT_01817 are separated by 204 nucleotides
H281DRAFT_01813: H281DRAFT_01813 - transcriptional regulator, AraC family, at 714,316 to 715,236
_01813
H281DRAFT_01814: H281DRAFT_01814 - transcriptional regulator, XRE family with cupin sensor, at 715,347 to 715,937
_01814
H281DRAFT_01815: H281DRAFT_01815 - L-amino acid N-acyltransferase YncA, at 715,934 to 716,464
_01815
H281DRAFT_01816: H281DRAFT_01816 - Uncharacterized protein, contains GYD domain, at 716,630 to 716,923
_01816
H281DRAFT_01817: H281DRAFT_01817 - Hemolysin activation/secretion protein, at 717,128 to 718,867
_01817
Position (kb) 715
716
717 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 715.045 kb on + strand, within H281DRAFT_01813 at 715.636 kb on + strand, within H281DRAFT_01814 at 715.637 kb on - strand, within H281DRAFT_01814 at 715.663 kb on - strand, within H281DRAFT_01814 at 715.762 kb on + strand at 715.887 kb on + strand at 716.360 kb on + strand, within H281DRAFT_01815 at 716.403 kb on - strand, within H281DRAFT_01815 at 716.587 kb on - strand at 716.587 kb on - strand at 716.632 kb on - strand at 716.647 kb on + strand at 716.648 kb on - strand at 716.715 kb on - strand, within H281DRAFT_01816 at 716.914 kb on - strand at 716.914 kb on - strand at 716.914 kb on - strand at 717.026 kb on + strand at 717.432 kb on + strand, within H281DRAFT_01817
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 715,045 + H281DRAFT_01813 0.79 -2.5 715,636 + H281DRAFT_01814 0.49 +0.3 715,637 - H281DRAFT_01814 0.49 -0.1 715,663 - H281DRAFT_01814 0.53 -0.3 715,762 + +2.9 715,887 + -0.7 716,360 + H281DRAFT_01815 0.80 +0.1 716,403 - H281DRAFT_01815 0.88 -0.0 716,587 - +0.3 716,587 - +0.9 716,632 - -1.5 716,647 + -0.1 716,648 - +0.2 716,715 - H281DRAFT_01816 0.29 -1.1 716,914 - -1.7 716,914 - -0.2 716,914 - +1.0 717,026 + -0.7 717,432 + H281DRAFT_01817 0.17 +0.5
Or see this region's nucleotide sequence