Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01801 and H281DRAFT_01802 are separated by 30 nucleotides H281DRAFT_01802 and H281DRAFT_01803 are separated by 144 nucleotides H281DRAFT_01803 and H281DRAFT_01804 are separated by 165 nucleotides
H281DRAFT_01801: H281DRAFT_01801 - Predicted arabinose efflux permease, MFS family, at 701,565 to 702,827
_01801
H281DRAFT_01802: H281DRAFT_01802 - Pimeloyl-ACP methyl ester carboxylesterase, at 702,858 to 703,739
_01802
H281DRAFT_01803: H281DRAFT_01803 - transcriptional regulator, HxlR family, at 703,884 to 704,339
_01803
H281DRAFT_01804: H281DRAFT_01804 - Predicted arabinose efflux permease, MFS family, at 704,505 to 705,749
_01804
Position (kb) 702
703
704 Strain fitness (log2 ratio) -2
-1
0
1
2 at 702.075 kb on + strand, within H281DRAFT_01801 at 702.076 kb on - strand, within H281DRAFT_01801 at 702.079 kb on - strand, within H281DRAFT_01801 at 702.158 kb on + strand, within H281DRAFT_01801 at 702.159 kb on - strand, within H281DRAFT_01801 at 702.511 kb on + strand, within H281DRAFT_01801 at 702.876 kb on - strand at 703.090 kb on - strand, within H281DRAFT_01802 at 703.162 kb on + strand, within H281DRAFT_01802 at 703.163 kb on - strand, within H281DRAFT_01802 at 703.408 kb on - strand, within H281DRAFT_01802 at 703.513 kb on - strand, within H281DRAFT_01802 at 703.576 kb on - strand, within H281DRAFT_01802 at 703.576 kb on - strand, within H281DRAFT_01802 at 703.611 kb on + strand, within H281DRAFT_01802 at 703.808 kb on - strand at 703.873 kb on - strand at 703.873 kb on - strand at 703.885 kb on + strand at 703.886 kb on - strand at 703.886 kb on - strand at 703.953 kb on + strand, within H281DRAFT_01803 at 703.964 kb on + strand, within H281DRAFT_01803 at 704.099 kb on - strand, within H281DRAFT_01803 at 704.099 kb on - strand, within H281DRAFT_01803 at 704.181 kb on + strand, within H281DRAFT_01803 at 704.637 kb on + strand, within H281DRAFT_01804
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 702,075 + H281DRAFT_01801 0.40 -0.8 702,076 - H281DRAFT_01801 0.40 -0.0 702,079 - H281DRAFT_01801 0.41 +0.3 702,158 + H281DRAFT_01801 0.47 -0.9 702,159 - H281DRAFT_01801 0.47 +1.9 702,511 + H281DRAFT_01801 0.75 -0.4 702,876 - -0.1 703,090 - H281DRAFT_01802 0.26 +0.1 703,162 + H281DRAFT_01802 0.34 +0.0 703,163 - H281DRAFT_01802 0.35 +0.3 703,408 - H281DRAFT_01802 0.62 +1.5 703,513 - H281DRAFT_01802 0.74 +1.0 703,576 - H281DRAFT_01802 0.81 -0.1 703,576 - H281DRAFT_01802 0.81 -2.3 703,611 + H281DRAFT_01802 0.85 -0.5 703,808 - -0.2 703,873 - -0.4 703,873 - -0.8 703,885 + -0.5 703,886 - -1.1 703,886 - +0.0 703,953 + H281DRAFT_01803 0.15 -1.5 703,964 + H281DRAFT_01803 0.18 -0.1 704,099 - H281DRAFT_01803 0.47 -0.6 704,099 - H281DRAFT_01803 0.47 -1.5 704,181 + H281DRAFT_01803 0.65 -2.6 704,637 + H281DRAFT_01804 0.11 +0.1
Or see this region's nucleotide sequence