Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01745 and H281DRAFT_01746 are separated by 4 nucleotides H281DRAFT_01746 and H281DRAFT_01747 overlap by 4 nucleotides H281DRAFT_01747 and H281DRAFT_01748 are separated by 99 nucleotides
H281DRAFT_01745: H281DRAFT_01745 - transcriptional regulator, LacI family, at 640,111 to 641,202
_01745
H281DRAFT_01746: H281DRAFT_01746 - D-3-phosphoglycerate dehydrogenase, at 641,207 to 642,214
_01746
H281DRAFT_01747: H281DRAFT_01747 - D-galactarolactone isomerase, at 642,211 to 643,026
_01747
H281DRAFT_01748: H281DRAFT_01748 - Bacteriophytochrome (light-regulated signal transduction histidine kinase), at 643,126 to 645,504
_01748
Position (kb) 641
642
643 Strain fitness (log2 ratio) -1
0
1
2 at 640.259 kb on - strand, within H281DRAFT_01745 at 640.346 kb on - strand, within H281DRAFT_01745 at 640.346 kb on - strand, within H281DRAFT_01745 at 640.346 kb on - strand, within H281DRAFT_01745 at 640.375 kb on + strand, within H281DRAFT_01745 at 641.218 kb on - strand at 641.218 kb on - strand at 641.303 kb on + strand at 641.473 kb on - strand, within H281DRAFT_01746 at 641.690 kb on + strand, within H281DRAFT_01746 at 641.894 kb on + strand, within H281DRAFT_01746 at 641.894 kb on + strand, within H281DRAFT_01746 at 641.895 kb on - strand, within H281DRAFT_01746 at 642.262 kb on + strand at 642.263 kb on - strand at 642.512 kb on + strand, within H281DRAFT_01747 at 642.513 kb on - strand, within H281DRAFT_01747 at 642.548 kb on + strand, within H281DRAFT_01747 at 642.643 kb on + strand, within H281DRAFT_01747 at 643.053 kb on - strand at 643.090 kb on + strand at 643.100 kb on + strand at 643.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 640,259 - H281DRAFT_01745 0.14 +0.4 640,346 - H281DRAFT_01745 0.22 -1.7 640,346 - H281DRAFT_01745 0.22 +0.9 640,346 - H281DRAFT_01745 0.22 +0.4 640,375 + H281DRAFT_01745 0.24 +0.2 641,218 - -0.7 641,218 - -1.1 641,303 + -0.2 641,473 - H281DRAFT_01746 0.26 -0.3 641,690 + H281DRAFT_01746 0.48 +2.0 641,894 + H281DRAFT_01746 0.68 +0.4 641,894 + H281DRAFT_01746 0.68 +0.1 641,895 - H281DRAFT_01746 0.68 +1.3 642,262 + +1.3 642,263 - +0.1 642,512 + H281DRAFT_01747 0.37 -0.3 642,513 - H281DRAFT_01747 0.37 +0.1 642,548 + H281DRAFT_01747 0.41 -0.0 642,643 + H281DRAFT_01747 0.53 -1.0 643,053 - +0.2 643,090 + -0.3 643,100 + +0.8 643,141 + -0.4
Or see this region's nucleotide sequence