Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01283 and H281DRAFT_01284 are separated by 118 nucleotides H281DRAFT_01284 and H281DRAFT_01285 are separated by 80 nucleotides
H281DRAFT_01283: H281DRAFT_01283 - Pimeloyl-ACP methyl ester carboxylesterase, at 121,583 to 122,434
_01283
H281DRAFT_01284: H281DRAFT_01284 - transcriptional regulator, LysR family, at 122,553 to 123,380
_01284
H281DRAFT_01285: H281DRAFT_01285 - ATP adenylyltransferase, at 123,461 to 124,405
_01285
Position (kb) 122
123
124 Strain fitness (log2 ratio) -1
0
1 at 121.572 kb on + strand at 121.680 kb on + strand, within H281DRAFT_01283 at 121.863 kb on - strand, within H281DRAFT_01283 at 121.865 kb on - strand, within H281DRAFT_01283 at 121.865 kb on - strand, within H281DRAFT_01283 at 121.943 kb on + strand, within H281DRAFT_01283 at 121.944 kb on - strand, within H281DRAFT_01283 at 122.352 kb on + strand at 122.352 kb on + strand at 122.391 kb on - strand at 122.434 kb on + strand at 122.435 kb on - strand at 122.435 kb on - strand at 122.588 kb on + strand at 122.589 kb on - strand at 122.589 kb on - strand at 122.705 kb on - strand, within H281DRAFT_01284 at 122.846 kb on - strand, within H281DRAFT_01284 at 123.156 kb on + strand, within H281DRAFT_01284 at 123.447 kb on - strand at 123.447 kb on - strand at 123.447 kb on - strand at 123.448 kb on + strand at 123.585 kb on + strand, within H281DRAFT_01285 at 123.602 kb on - strand, within H281DRAFT_01285 at 123.960 kb on + strand, within H281DRAFT_01285 at 124.220 kb on + strand, within H281DRAFT_01285 at 124.221 kb on - strand, within H281DRAFT_01285 at 124.221 kb on - strand, within H281DRAFT_01285
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 121,572 + -0.2 121,680 + H281DRAFT_01283 0.11 +0.3 121,863 - H281DRAFT_01283 0.33 +0.3 121,865 - H281DRAFT_01283 0.33 +1.0 121,865 - H281DRAFT_01283 0.33 +0.6 121,943 + H281DRAFT_01283 0.42 +0.5 121,944 - H281DRAFT_01283 0.42 +0.5 122,352 + +0.2 122,352 + -0.2 122,391 - -0.6 122,434 + -0.0 122,435 - -0.6 122,435 - +0.1 122,588 + -1.2 122,589 - +0.3 122,589 - -1.1 122,705 - H281DRAFT_01284 0.18 -0.3 122,846 - H281DRAFT_01284 0.35 +0.2 123,156 + H281DRAFT_01284 0.73 -0.7 123,447 - -0.5 123,447 - -0.7 123,447 - +0.8 123,448 + -0.6 123,585 + H281DRAFT_01285 0.13 -0.4 123,602 - H281DRAFT_01285 0.15 +0.5 123,960 + H281DRAFT_01285 0.53 -0.7 124,220 + H281DRAFT_01285 0.80 +1.3 124,221 - H281DRAFT_01285 0.80 -1.1 124,221 - H281DRAFT_01285 0.80 -0.9
Or see this region's nucleotide sequence