Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01214 and H281DRAFT_01215 are separated by 197 nucleotides H281DRAFT_01215 and H281DRAFT_01216 are separated by 526 nucleotides H281DRAFT_01216 and H281DRAFT_01217 are separated by 163 nucleotides H281DRAFT_01217 and H281DRAFT_01218 are separated by 382 nucleotides
H281DRAFT_01214: H281DRAFT_01214 - Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains, at 53,376 to 54,020
_01214
H281DRAFT_01215: H281DRAFT_01215 - hypothetical protein, at 54,218 to 54,436
_01215
H281DRAFT_01216: H281DRAFT_01216 - hypothetical protein, at 54,963 to 55,250
_01216
H281DRAFT_01217: H281DRAFT_01217 - bacterial translation initiation factor 1 (bIF-1), at 55,414 to 55,689
_01217
H281DRAFT_01218: H281DRAFT_01218 - response regulator receiver and ANTAR domain protein, at 56,072 to 56,647
_01218
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.118 kb on - strand at 54.189 kb on - strand at 54.200 kb on + strand at 54.200 kb on + strand at 54.200 kb on + strand at 54.317 kb on - strand, within H281DRAFT_01215 at 54.335 kb on - strand, within H281DRAFT_01215 at 54.567 kb on - strand at 54.570 kb on + strand at 54.570 kb on + strand at 54.570 kb on + strand at 54.589 kb on - strand at 54.595 kb on - strand at 54.946 kb on + strand at 54.946 kb on + strand at 54.947 kb on - strand at 54.947 kb on - strand at 54.956 kb on + strand at 54.956 kb on + strand at 54.957 kb on - strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.961 kb on - strand at 54.961 kb on - strand at 54.961 kb on - strand at 54.961 kb on - strand at 54.962 kb on + strand at 54.962 kb on + strand at 54.962 kb on + strand at 54.962 kb on + strand at 54.963 kb on - strand at 54.963 kb on - strand at 54.963 kb on - strand at 54.963 kb on - strand at 54.963 kb on - strand at 54.963 kb on - strand at 54.968 kb on + strand at 54.968 kb on + strand at 54.968 kb on + strand at 54.969 kb on - strand at 54.991 kb on - strand at 54.991 kb on - strand at 54.991 kb on - strand at 55.000 kb on - strand, within H281DRAFT_01216 at 55.071 kb on + strand, within H281DRAFT_01216 at 55.143 kb on + strand, within H281DRAFT_01216 at 55.143 kb on + strand, within H281DRAFT_01216 at 55.282 kb on + strand at 55.282 kb on + strand at 55.295 kb on + strand at 55.351 kb on + strand at 55.409 kb on + strand at 55.409 kb on + strand at 55.410 kb on - strand at 55.506 kb on - strand, within H281DRAFT_01217 at 55.506 kb on - strand, within H281DRAFT_01217 at 55.516 kb on + strand, within H281DRAFT_01217 at 55.516 kb on + strand, within H281DRAFT_01217 at 55.546 kb on - strand, within H281DRAFT_01217 at 56.002 kb on + strand at 56.003 kb on - strand at 56.003 kb on - strand at 56.028 kb on - strand at 56.066 kb on + strand at 56.067 kb on - strand at 56.121 kb on + strand at 56.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 54,118 - +0.3 54,189 - -0.8 54,200 + -0.5 54,200 + +0.7 54,200 + +0.3 54,317 - H281DRAFT_01215 0.45 -0.2 54,335 - H281DRAFT_01215 0.53 +0.1 54,567 - -1.0 54,570 + -1.2 54,570 + -3.0 54,570 + -0.0 54,589 - -0.6 54,595 - -1.4 54,946 + -0.4 54,946 + -0.0 54,947 - -0.4 54,947 - -1.5 54,956 + -0.5 54,956 + +0.1 54,957 - -0.6 54,960 + +0.3 54,960 + +0.3 54,960 + +1.0 54,960 + +0.2 54,960 + +0.3 54,961 - -0.3 54,961 - -0.2 54,961 - -0.5 54,961 - -0.7 54,962 + +0.6 54,962 + +0.8 54,962 + -0.5 54,962 + +0.4 54,963 - +0.2 54,963 - -0.4 54,963 - +0.1 54,963 - +1.4 54,963 - -0.4 54,963 - -0.4 54,968 + +0.7 54,968 + +0.4 54,968 + +0.7 54,969 - -0.4 54,991 - +0.3 54,991 - +0.5 54,991 - -0.5 55,000 - H281DRAFT_01216 0.13 -1.1 55,071 + H281DRAFT_01216 0.38 +2.1 55,143 + H281DRAFT_01216 0.62 -0.2 55,143 + H281DRAFT_01216 0.62 +0.9 55,282 + +1.3 55,282 + +0.1 55,295 + -1.1 55,351 + +0.1 55,409 + -1.0 55,409 + -0.5 55,410 - -0.2 55,506 - H281DRAFT_01217 0.33 -0.9 55,506 - H281DRAFT_01217 0.33 -1.1 55,516 + H281DRAFT_01217 0.37 -1.5 55,516 + H281DRAFT_01217 0.37 -0.2 55,546 - H281DRAFT_01217 0.48 -2.1 56,002 + -0.6 56,003 - -1.0 56,003 - -1.8 56,028 - -1.0 56,066 + +0.5 56,067 - -0.4 56,121 + +0.3 56,122 - -0.7
Or see this region's nucleotide sequence