Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01195 and H281DRAFT_01196 are separated by 410 nucleotides H281DRAFT_01196 and H281DRAFT_01197 are separated by 106 nucleotides
H281DRAFT_01195: H281DRAFT_01195 - 4-hydroxy-tetrahydrodipicolinate synthase, at 32,117 to 33,061
_01195
H281DRAFT_01196: H281DRAFT_01196 - transcriptional regulator, PadR family, at 33,472 to 34,284
_01196
H281DRAFT_01197: H281DRAFT_01197 - NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains, at 34,391 to 35,215
_01197
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.541 kb on + strand, within H281DRAFT_01195 at 32.541 kb on + strand, within H281DRAFT_01195 at 32.643 kb on + strand, within H281DRAFT_01195 at 32.655 kb on + strand, within H281DRAFT_01195 at 32.655 kb on + strand, within H281DRAFT_01195 at 32.655 kb on + strand, within H281DRAFT_01195 at 32.655 kb on + strand, within H281DRAFT_01195 at 32.656 kb on - strand, within H281DRAFT_01195 at 32.656 kb on - strand, within H281DRAFT_01195 at 32.989 kb on - strand at 33.113 kb on + strand at 33.191 kb on + strand at 33.216 kb on + strand at 33.216 kb on + strand at 33.217 kb on - strand at 33.217 kb on - strand at 33.217 kb on - strand at 33.221 kb on - strand at 33.246 kb on - strand at 33.381 kb on + strand at 33.382 kb on - strand at 33.391 kb on + strand at 33.392 kb on - strand at 33.515 kb on - strand at 33.901 kb on + strand, within H281DRAFT_01196 at 33.901 kb on + strand, within H281DRAFT_01196 at 33.920 kb on - strand, within H281DRAFT_01196 at 35.046 kb on - strand, within H281DRAFT_01197 at 35.046 kb on - strand, within H281DRAFT_01197 at 35.046 kb on - strand, within H281DRAFT_01197 at 35.046 kb on - strand, within H281DRAFT_01197 at 35.074 kb on - strand, within H281DRAFT_01197 at 35.223 kb on - strand at 35.273 kb on + strand at 35.273 kb on + strand at 35.274 kb on - strand at 35.275 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 32,541 + H281DRAFT_01195 0.45 +0.0 32,541 + H281DRAFT_01195 0.45 +0.8 32,643 + H281DRAFT_01195 0.56 +2.0 32,655 + H281DRAFT_01195 0.57 -0.6 32,655 + H281DRAFT_01195 0.57 -0.0 32,655 + H281DRAFT_01195 0.57 -0.7 32,655 + H281DRAFT_01195 0.57 -0.5 32,656 - H281DRAFT_01195 0.57 +0.5 32,656 - H281DRAFT_01195 0.57 +0.4 32,989 - -0.1 33,113 + -0.1 33,191 + +0.1 33,216 + +0.3 33,216 + -0.8 33,217 - -0.5 33,217 - -0.9 33,217 - +0.6 33,221 - +0.9 33,246 - -0.6 33,381 + -0.1 33,382 - -0.3 33,391 + -0.2 33,392 - -0.0 33,515 - -2.2 33,901 + H281DRAFT_01196 0.53 +0.8 33,901 + H281DRAFT_01196 0.53 -0.6 33,920 - H281DRAFT_01196 0.55 +1.5 35,046 - H281DRAFT_01197 0.79 +0.4 35,046 - H281DRAFT_01197 0.79 +0.7 35,046 - H281DRAFT_01197 0.79 +0.2 35,046 - H281DRAFT_01197 0.79 +0.0 35,074 - H281DRAFT_01197 0.83 +0.2 35,223 - -0.0 35,273 + +0.7 35,273 + -1.3 35,274 - -0.7 35,275 + -0.6
Or see this region's nucleotide sequence