Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00697

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00696 and H281DRAFT_00697 are separated by 15 nucleotidesH281DRAFT_00697 and H281DRAFT_00698 are separated by 387 nucleotides H281DRAFT_00696: H281DRAFT_00696 - Predicted arabinose efflux permease, MFS family, at 777,060 to 778,361 _00696 H281DRAFT_00697: H281DRAFT_00697 - FAD/FMN-containing dehydrogenase, at 778,377 to 779,786 _00697 H281DRAFT_00698: H281DRAFT_00698 - transcriptional regulator, TetR family, at 780,174 to 780,929 _00698 Position (kb) 778 779 780Strain fitness (log2 ratio) -1 0 1at 777.434 kb on - strand, within H281DRAFT_00696at 777.496 kb on - strand, within H281DRAFT_00696at 777.569 kb on - strand, within H281DRAFT_00696at 777.721 kb on - strand, within H281DRAFT_00696at 778.093 kb on + strand, within H281DRAFT_00696at 779.218 kb on - strand, within H281DRAFT_00697at 779.218 kb on - strand, within H281DRAFT_00697at 779.218 kb on - strand, within H281DRAFT_00697at 779.248 kb on - strand, within H281DRAFT_00697at 779.625 kb on - strand, within H281DRAFT_00697at 779.784 kb on + strandat 780.099 kb on + strandat 780.151 kb on + strandat 780.567 kb on - strand, within H281DRAFT_00698

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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777,434 - H281DRAFT_00696 0.29 +0.1
777,496 - H281DRAFT_00696 0.33 -0.0
777,569 - H281DRAFT_00696 0.39 -0.2
777,721 - H281DRAFT_00696 0.51 +1.6
778,093 + H281DRAFT_00696 0.79 +0.5
779,218 - H281DRAFT_00697 0.60 -0.5
779,218 - H281DRAFT_00697 0.60 -0.6
779,218 - H281DRAFT_00697 0.60 +0.3
779,248 - H281DRAFT_00697 0.62 +0.3
779,625 - H281DRAFT_00697 0.89 -0.7
779,784 + -0.6
780,099 + +1.4
780,151 + -0.3
780,567 - H281DRAFT_00698 0.52 +0.2

Or see this region's nucleotide sequence