Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00301 and H281DRAFT_00302 are separated by 154 nucleotides H281DRAFT_00302 and H281DRAFT_00303 are separated by 240 nucleotides
H281DRAFT_00301: H281DRAFT_00301 - DNA translocase FtsK, at 321,769 to 325,794
_00301
H281DRAFT_00302: H281DRAFT_00302 - Heat shock protein, at 325,949 to 326,488
_00302
H281DRAFT_00303: H281DRAFT_00303 - formate-dependent phosphoribosylglycinamide formyltransferase, at 326,729 to 327,952
_00303
Position (kb) 325
326
327 Strain fitness (log2 ratio) -2
-1
0
1
2 at 325.546 kb on - strand at 325.735 kb on + strand at 325.735 kb on + strand at 325.784 kb on - strand at 325.784 kb on - strand at 325.794 kb on + strand at 325.884 kb on + strand at 325.884 kb on + strand at 325.884 kb on + strand at 325.884 kb on + strand at 325.885 kb on - strand at 325.885 kb on - strand at 325.885 kb on - strand at 325.885 kb on - strand at 325.951 kb on - strand at 325.951 kb on - strand at 325.973 kb on + strand at 325.974 kb on - strand at 326.064 kb on + strand, within H281DRAFT_00302 at 326.147 kb on + strand, within H281DRAFT_00302 at 326.165 kb on - strand, within H281DRAFT_00302 at 326.166 kb on + strand, within H281DRAFT_00302 at 326.166 kb on + strand, within H281DRAFT_00302 at 326.166 kb on + strand, within H281DRAFT_00302 at 326.167 kb on - strand, within H281DRAFT_00302 at 326.167 kb on - strand, within H281DRAFT_00302 at 326.322 kb on - strand, within H281DRAFT_00302 at 326.322 kb on - strand, within H281DRAFT_00302 at 327.279 kb on - strand, within H281DRAFT_00303 at 327.305 kb on + strand, within H281DRAFT_00303 at 327.305 kb on + strand, within H281DRAFT_00303 at 327.306 kb on - strand, within H281DRAFT_00303 at 327.306 kb on - strand, within H281DRAFT_00303 at 327.404 kb on + strand, within H281DRAFT_00303 at 327.404 kb on + strand, within H281DRAFT_00303 at 327.404 kb on + strand, within H281DRAFT_00303 at 327.405 kb on - strand, within H281DRAFT_00303 at 327.446 kb on + strand, within H281DRAFT_00303 at 327.446 kb on + strand, within H281DRAFT_00303 at 327.446 kb on + strand, within H281DRAFT_00303 at 327.446 kb on + strand, within H281DRAFT_00303 at 327.447 kb on - strand, within H281DRAFT_00303
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 325,546 - +1.7 325,735 + -0.2 325,735 + +1.2 325,784 - -0.1 325,784 - +0.5 325,794 + -0.4 325,884 + +0.0 325,884 + -0.2 325,884 + -0.4 325,884 + +0.7 325,885 - -0.4 325,885 - +1.2 325,885 - -0.9 325,885 - -0.8 325,951 - -1.6 325,951 - -0.5 325,973 + +2.6 325,974 - -0.6 326,064 + H281DRAFT_00302 0.21 -0.3 326,147 + H281DRAFT_00302 0.37 -0.5 326,165 - H281DRAFT_00302 0.40 +0.1 326,166 + H281DRAFT_00302 0.40 -0.4 326,166 + H281DRAFT_00302 0.40 +1.8 326,166 + H281DRAFT_00302 0.40 -0.3 326,167 - H281DRAFT_00302 0.40 -0.5 326,167 - H281DRAFT_00302 0.40 -0.7 326,322 - H281DRAFT_00302 0.69 +0.4 326,322 - H281DRAFT_00302 0.69 -1.5 327,279 - H281DRAFT_00303 0.45 -1.9 327,305 + H281DRAFT_00303 0.47 -1.8 327,305 + H281DRAFT_00303 0.47 +0.5 327,306 - H281DRAFT_00303 0.47 -1.0 327,306 - H281DRAFT_00303 0.47 +0.3 327,404 + H281DRAFT_00303 0.55 +0.0 327,404 + H281DRAFT_00303 0.55 +0.0 327,404 + H281DRAFT_00303 0.55 +0.5 327,405 - H281DRAFT_00303 0.55 +1.4 327,446 + H281DRAFT_00303 0.59 -0.1 327,446 + H281DRAFT_00303 0.59 -0.4 327,446 + H281DRAFT_00303 0.59 +0.8 327,446 + H281DRAFT_00303 0.59 -0.8 327,447 - H281DRAFT_00303 0.59 -1.0
Or see this region's nucleotide sequence