Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00215 and H281DRAFT_00216 are separated by 12 nucleotides H281DRAFT_00216 and H281DRAFT_00217 are separated by 9 nucleotides H281DRAFT_00217 and H281DRAFT_00218 are separated by 156 nucleotides
H281DRAFT_00215: H281DRAFT_00215 - Uncharacterized membrane protein YccC, at 233,107 to 235,215
_00215
H281DRAFT_00216: H281DRAFT_00216 - putative endonuclease, at 235,228 to 235,554
_00216
H281DRAFT_00217: H281DRAFT_00217 - hypothetical protein, at 235,564 to 236,733
_00217
H281DRAFT_00218: H281DRAFT_00218 - NAD+ synthase (glutamine-hydrolysing), at 236,890 to 238,635
_00218
Position (kb) 235
236
237 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 234.650 kb on - strand, within H281DRAFT_00215 at 234.712 kb on + strand, within H281DRAFT_00215 at 234.751 kb on + strand, within H281DRAFT_00215 at 234.751 kb on + strand, within H281DRAFT_00215 at 234.752 kb on - strand, within H281DRAFT_00215 at 235.443 kb on - strand, within H281DRAFT_00216 at 235.507 kb on - strand, within H281DRAFT_00216 at 235.538 kb on + strand at 235.539 kb on - strand at 235.605 kb on - strand at 235.605 kb on - strand at 235.991 kb on + strand, within H281DRAFT_00217 at 236.107 kb on + strand, within H281DRAFT_00217 at 236.107 kb on + strand, within H281DRAFT_00217 at 236.417 kb on + strand, within H281DRAFT_00217 at 236.438 kb on + strand, within H281DRAFT_00217 at 236.439 kb on - strand, within H281DRAFT_00217 at 236.469 kb on - strand, within H281DRAFT_00217 at 236.773 kb on + strand at 236.773 kb on + strand at 236.773 kb on + strand at 236.774 kb on - strand at 236.774 kb on - strand at 237.070 kb on + strand, within H281DRAFT_00218 at 237.192 kb on + strand, within H281DRAFT_00218 at 237.193 kb on - strand, within H281DRAFT_00218 at 237.193 kb on - strand, within H281DRAFT_00218
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 234,650 - H281DRAFT_00215 0.73 +0.7 234,712 + H281DRAFT_00215 0.76 +0.2 234,751 + H281DRAFT_00215 0.78 +3.0 234,751 + H281DRAFT_00215 0.78 +0.4 234,752 - H281DRAFT_00215 0.78 +1.3 235,443 - H281DRAFT_00216 0.66 +1.0 235,507 - H281DRAFT_00216 0.85 -1.4 235,538 + +0.9 235,539 - -0.4 235,605 - -0.4 235,605 - -0.0 235,991 + H281DRAFT_00217 0.36 +0.5 236,107 + H281DRAFT_00217 0.46 +0.2 236,107 + H281DRAFT_00217 0.46 -1.2 236,417 + H281DRAFT_00217 0.73 +0.4 236,438 + H281DRAFT_00217 0.75 -0.2 236,439 - H281DRAFT_00217 0.75 +0.2 236,469 - H281DRAFT_00217 0.77 -1.0 236,773 + +0.8 236,773 + -0.7 236,773 + -0.5 236,774 - -0.4 236,774 - -0.9 237,070 + H281DRAFT_00218 0.10 -1.1 237,192 + H281DRAFT_00218 0.17 +0.5 237,193 - H281DRAFT_00218 0.17 -2.1 237,193 - H281DRAFT_00218 0.17 -1.8
Or see this region's nucleotide sequence