Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00188

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00186 and H281DRAFT_00187 are separated by 14 nucleotidesH281DRAFT_00187 and H281DRAFT_00188 are separated by 80 nucleotidesH281DRAFT_00188 and H281DRAFT_00189 are separated by 209 nucleotides H281DRAFT_00186: H281DRAFT_00186 - septum site-determining protein MinD, at 200,585 to 201,400 _00186 H281DRAFT_00187: H281DRAFT_00187 - cell division topological specificity factor MinE, at 201,415 to 201,672 _00187 H281DRAFT_00188: H281DRAFT_00188 - H+/Cl- antiporter ClcA, at 201,753 to 203,270 _00188 H281DRAFT_00189: H281DRAFT_00189 - heptosyltransferase-1, at 203,480 to 204,481 _00189 Position (kb) 201 202 203 204Strain fitness (log2 ratio) -2 -1 0 1 2at 200.756 kb on + strand, within H281DRAFT_00186at 200.757 kb on - strand, within H281DRAFT_00186at 200.930 kb on + strand, within H281DRAFT_00186at 200.931 kb on - strand, within H281DRAFT_00186at 201.131 kb on + strand, within H281DRAFT_00186at 201.299 kb on + strand, within H281DRAFT_00186at 201.300 kb on - strand, within H281DRAFT_00186at 201.302 kb on - strand, within H281DRAFT_00186at 201.650 kb on + strandat 201.668 kb on + strandat 201.668 kb on + strandat 201.668 kb on + strandat 201.669 kb on - strandat 201.670 kb on + strandat 201.670 kb on + strandat 201.670 kb on + strandat 201.670 kb on + strandat 201.671 kb on - strandat 201.876 kb on - strandat 201.876 kb on - strandat 201.876 kb on - strandat 201.876 kb on - strandat 201.876 kb on - strandat 201.876 kb on - strandat 201.985 kb on + strand, within H281DRAFT_00188at 201.985 kb on + strand, within H281DRAFT_00188at 202.147 kb on + strand, within H281DRAFT_00188at 202.148 kb on - strand, within H281DRAFT_00188at 202.277 kb on - strand, within H281DRAFT_00188at 202.530 kb on - strand, within H281DRAFT_00188at 202.609 kb on + strand, within H281DRAFT_00188at 202.609 kb on + strand, within H281DRAFT_00188at 202.610 kb on - strand, within H281DRAFT_00188at 202.613 kb on + strand, within H281DRAFT_00188at 202.613 kb on + strand, within H281DRAFT_00188at 202.613 kb on + strand, within H281DRAFT_00188at 202.613 kb on + strand, within H281DRAFT_00188at 202.613 kb on + strand, within H281DRAFT_00188at 202.614 kb on - strand, within H281DRAFT_00188at 202.614 kb on - strand, within H281DRAFT_00188at 202.615 kb on + strand, within H281DRAFT_00188at 202.615 kb on + strand, within H281DRAFT_00188at 202.615 kb on + strand, within H281DRAFT_00188at 202.615 kb on + strand, within H281DRAFT_00188at 202.615 kb on + strand, within H281DRAFT_00188at 202.615 kb on + strandat 202.616 kb on - strand, within H281DRAFT_00188at 202.616 kb on - strand, within H281DRAFT_00188at 202.616 kb on - strand, within H281DRAFT_00188at 202.616 kb on - strand, within H281DRAFT_00188at 202.616 kb on - strand, within H281DRAFT_00188at 202.616 kb on - strand, within H281DRAFT_00188at 202.743 kb on - strand, within H281DRAFT_00188at 202.819 kb on + strand, within H281DRAFT_00188at 202.820 kb on - strand, within H281DRAFT_00188at 202.820 kb on - strand, within H281DRAFT_00188at 202.886 kb on + strand, within H281DRAFT_00188at 203.050 kb on - strand, within H281DRAFT_00188at 203.204 kb on - strandat 203.297 kb on + strandat 203.297 kb on + strandat 203.298 kb on - strandat 203.298 kb on - strandat 203.298 kb on - strandat 203.299 kb on + strandat 203.299 kb on + strandat 203.300 kb on - strandat 203.300 kb on - strandat 203.300 kb on - strandat 203.317 kb on + strandat 203.733 kb on - strand, within H281DRAFT_00189at 203.745 kb on - strand, within H281DRAFT_00189at 203.768 kb on + strand, within H281DRAFT_00189at 203.861 kb on + strand, within H281DRAFT_00189at 203.964 kb on - strand, within H281DRAFT_00189

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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200,756 + H281DRAFT_00186 0.21 +0.9
200,757 - H281DRAFT_00186 0.21 -1.5
200,930 + H281DRAFT_00186 0.42 +0.1
200,931 - H281DRAFT_00186 0.42 -0.8
201,131 + H281DRAFT_00186 0.67 +0.7
201,299 + H281DRAFT_00186 0.88 -0.0
201,300 - H281DRAFT_00186 0.88 -0.9
201,302 - H281DRAFT_00186 0.88 -0.0
201,650 + +0.3
201,668 + +1.1
201,668 + +0.2
201,668 + +0.0
201,669 - -0.2
201,670 + +0.8
201,670 + -0.1
201,670 + -0.4
201,670 + +0.2
201,671 - +0.2
201,876 - -0.7
201,876 - -0.2
201,876 - -0.6
201,876 - -2.0
201,876 - -0.3
201,876 - +1.4
201,985 + H281DRAFT_00188 0.15 +1.2
201,985 + H281DRAFT_00188 0.15 -0.6
202,147 + H281DRAFT_00188 0.26 -0.0
202,148 - H281DRAFT_00188 0.26 -0.3
202,277 - H281DRAFT_00188 0.35 +0.8
202,530 - H281DRAFT_00188 0.51 +0.6
202,609 + H281DRAFT_00188 0.56 +0.5
202,609 + H281DRAFT_00188 0.56 +0.4
202,610 - H281DRAFT_00188 0.56 +0.8
202,613 + H281DRAFT_00188 0.57 -0.3
202,613 + H281DRAFT_00188 0.57 +0.3
202,613 + H281DRAFT_00188 0.57 -0.3
202,613 + H281DRAFT_00188 0.57 +0.1
202,613 + H281DRAFT_00188 0.57 -1.1
202,614 - H281DRAFT_00188 0.57 -0.0
202,614 - H281DRAFT_00188 0.57 +0.3
202,615 + H281DRAFT_00188 0.57 +1.5
202,615 + H281DRAFT_00188 0.57 -0.3
202,615 + H281DRAFT_00188 0.57 +0.5
202,615 + H281DRAFT_00188 0.57 -0.4
202,615 + H281DRAFT_00188 0.57 -0.2
202,615 + +1.8
202,616 - H281DRAFT_00188 0.57 +0.9
202,616 - H281DRAFT_00188 0.57 -1.5
202,616 - H281DRAFT_00188 0.57 -0.4
202,616 - H281DRAFT_00188 0.57 -0.2
202,616 - H281DRAFT_00188 0.57 -0.3
202,616 - H281DRAFT_00188 0.57 -0.3
202,743 - H281DRAFT_00188 0.65 -0.5
202,819 + H281DRAFT_00188 0.70 -0.0
202,820 - H281DRAFT_00188 0.70 -0.4
202,820 - H281DRAFT_00188 0.70 -0.4
202,886 + H281DRAFT_00188 0.75 -0.4
203,050 - H281DRAFT_00188 0.85 -0.6
203,204 - +0.2
203,297 + +1.1
203,297 + -0.4
203,298 - -0.9
203,298 - +0.9
203,298 - -0.3
203,299 + +0.4
203,299 + +0.4
203,300 - -0.4
203,300 - +0.2
203,300 - -0.6
203,317 + +0.7
203,733 - H281DRAFT_00189 0.25 -0.2
203,745 - H281DRAFT_00189 0.26 -0.0
203,768 + H281DRAFT_00189 0.29 -1.0
203,861 + H281DRAFT_00189 0.38 -2.0
203,964 - H281DRAFT_00189 0.48 -0.1

Or see this region's nucleotide sequence