Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00040 and H281DRAFT_00041 overlap by 1 nucleotides H281DRAFT_00041 and H281DRAFT_00042 overlap by 14 nucleotides H281DRAFT_00042 and H281DRAFT_00043 are separated by 147 nucleotides
H281DRAFT_00040: H281DRAFT_00040 - AraC-type DNA-binding protein, at 44,868 to 45,848
_00040
H281DRAFT_00041: H281DRAFT_00041 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 45,848 to 46,585
_00041
H281DRAFT_00042: H281DRAFT_00042 - hypothetical protein, at 46,572 to 46,778
_00042
H281DRAFT_00043: H281DRAFT_00043 - protein of unknown function (DUF3331), at 46,926 to 47,339
_00043
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1 at 44.922 kb on + strand at 44.923 kb on - strand at 44.927 kb on - strand at 45.039 kb on - strand, within H281DRAFT_00040 at 45.114 kb on + strand, within H281DRAFT_00040 at 45.243 kb on + strand, within H281DRAFT_00040 at 45.246 kb on - strand, within H281DRAFT_00040 at 45.378 kb on - strand, within H281DRAFT_00040 at 45.423 kb on - strand, within H281DRAFT_00040 at 45.555 kb on - strand, within H281DRAFT_00040 at 45.577 kb on - strand, within H281DRAFT_00040 at 45.663 kb on + strand, within H281DRAFT_00040 at 45.664 kb on - strand, within H281DRAFT_00040 at 45.668 kb on + strand, within H281DRAFT_00040 at 45.668 kb on + strand, within H281DRAFT_00040 at 45.694 kb on - strand, within H281DRAFT_00040 at 45.694 kb on - strand, within H281DRAFT_00040 at 45.778 kb on + strand at 46.172 kb on - strand, within H281DRAFT_00041 at 46.406 kb on + strand, within H281DRAFT_00041 at 46.407 kb on - strand, within H281DRAFT_00041 at 46.513 kb on + strand at 46.602 kb on - strand, within H281DRAFT_00042 at 46.776 kb on + strand at 46.777 kb on - strand at 46.777 kb on - strand at 46.811 kb on + strand at 46.881 kb on + strand at 46.904 kb on + strand at 46.905 kb on - strand at 46.945 kb on - strand at 46.945 kb on - strand at 47.047 kb on + strand, within H281DRAFT_00043 at 47.048 kb on - strand, within H281DRAFT_00043 at 47.121 kb on + strand, within H281DRAFT_00043 at 47.164 kb on - strand, within H281DRAFT_00043 at 47.466 kb on - strand at 47.466 kb on - strand at 47.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 44,922 + -1.0 44,923 - -1.4 44,927 - +0.1 45,039 - H281DRAFT_00040 0.17 -0.1 45,114 + H281DRAFT_00040 0.25 -0.5 45,243 + H281DRAFT_00040 0.38 -0.1 45,246 - H281DRAFT_00040 0.39 -2.5 45,378 - H281DRAFT_00040 0.52 -0.3 45,423 - H281DRAFT_00040 0.57 +0.0 45,555 - H281DRAFT_00040 0.70 +0.7 45,577 - H281DRAFT_00040 0.72 +0.7 45,663 + H281DRAFT_00040 0.81 -0.2 45,664 - H281DRAFT_00040 0.81 -1.1 45,668 + H281DRAFT_00040 0.82 -0.3 45,668 + H281DRAFT_00040 0.82 -0.1 45,694 - H281DRAFT_00040 0.84 -1.5 45,694 - H281DRAFT_00040 0.84 -2.0 45,778 + +0.1 46,172 - H281DRAFT_00041 0.44 +0.0 46,406 + H281DRAFT_00041 0.76 -1.2 46,407 - H281DRAFT_00041 0.76 -0.2 46,513 + -1.2 46,602 - H281DRAFT_00042 0.14 -0.6 46,776 + +0.3 46,777 - -0.6 46,777 - -0.9 46,811 + -0.0 46,881 + -0.2 46,904 + +0.1 46,905 - -0.8 46,945 - +0.2 46,945 - -0.6 47,047 + H281DRAFT_00043 0.29 +1.1 47,048 - H281DRAFT_00043 0.29 -0.1 47,121 + H281DRAFT_00043 0.47 -0.1 47,164 - H281DRAFT_00043 0.57 -0.3 47,466 - +0.2 47,466 - +1.2 47,481 + -0.6
Or see this region's nucleotide sequence