Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06195

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06193 and H281DRAFT_06194 are separated by 80 nucleotidesH281DRAFT_06194 and H281DRAFT_06195 are separated by 276 nucleotidesH281DRAFT_06195 and H281DRAFT_06196 are separated by 33 nucleotides H281DRAFT_06193: H281DRAFT_06193 - hypothetical protein, at 82,248 to 83,075 _06193 H281DRAFT_06194: H281DRAFT_06194 - Proteolipid membrane potential modulator, at 83,156 to 83,350 _06194 H281DRAFT_06195: H281DRAFT_06195 - hypothetical protein, at 83,627 to 83,890 _06195 H281DRAFT_06196: H281DRAFT_06196 - ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module, at 83,924 to 85,891 _06196 Position (kb) 83 84Strain fitness (log2 ratio) -1 0 1 2at 82.708 kb on + strand, within H281DRAFT_06193at 82.708 kb on + strand, within H281DRAFT_06193at 82.708 kb on + strand, within H281DRAFT_06193at 82.709 kb on - strand, within H281DRAFT_06193at 82.709 kb on - strand, within H281DRAFT_06193at 82.709 kb on - strand, within H281DRAFT_06193at 82.754 kb on + strand, within H281DRAFT_06193at 82.754 kb on + strand, within H281DRAFT_06193at 82.754 kb on + strand, within H281DRAFT_06193at 82.755 kb on - strand, within H281DRAFT_06193at 82.755 kb on - strand, within H281DRAFT_06193at 83.097 kb on + strandat 83.097 kb on + strandat 83.097 kb on + strandat 83.108 kb on + strandat 83.108 kb on + strandat 83.108 kb on + strandat 83.202 kb on + strand, within H281DRAFT_06194at 83.211 kb on - strand, within H281DRAFT_06194at 83.253 kb on - strand, within H281DRAFT_06194at 83.342 kb on + strandat 83.343 kb on - strandat 83.354 kb on + strandat 83.377 kb on - strandat 83.407 kb on - strandat 83.409 kb on + strandat 83.409 kb on + strandat 83.409 kb on + strandat 83.523 kb on - strandat 83.523 kb on - strandat 83.591 kb on + strandat 83.592 kb on - strandat 83.598 kb on + strandat 83.804 kb on + strand, within H281DRAFT_06195at 83.804 kb on + strand, within H281DRAFT_06195at 83.805 kb on - strand, within H281DRAFT_06195at 83.805 kb on - strand, within H281DRAFT_06195at 83.805 kb on - strand, within H281DRAFT_06195at 83.806 kb on + strand, within H281DRAFT_06195at 83.807 kb on - strand, within H281DRAFT_06195at 83.807 kb on - strand, within H281DRAFT_06195at 83.860 kb on - strand, within H281DRAFT_06195at 84.059 kb on + strandat 84.098 kb on - strandat 84.098 kb on - strandat 84.321 kb on + strand, within H281DRAFT_06196at 84.322 kb on - strand, within H281DRAFT_06196at 84.557 kb on + strand, within H281DRAFT_06196at 84.557 kb on + strand, within H281DRAFT_06196at 84.558 kb on - strand, within H281DRAFT_06196at 84.678 kb on + strand, within H281DRAFT_06196at 84.679 kb on - strand, within H281DRAFT_06196at 84.686 kb on + strand, within H281DRAFT_06196at 84.686 kb on + strand, within H281DRAFT_06196at 84.686 kb on + strand, within H281DRAFT_06196at 84.758 kb on + strand, within H281DRAFT_06196at 84.759 kb on - strand, within H281DRAFT_06196at 84.792 kb on - strandat 84.792 kb on - strand, within H281DRAFT_06196

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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82,708 + H281DRAFT_06193 0.56 +0.4
82,708 + H281DRAFT_06193 0.56 +0.2
82,708 + H281DRAFT_06193 0.56 -0.5
82,709 - H281DRAFT_06193 0.56 +1.0
82,709 - H281DRAFT_06193 0.56 -0.0
82,709 - H281DRAFT_06193 0.56 -0.4
82,754 + H281DRAFT_06193 0.61 -0.0
82,754 + H281DRAFT_06193 0.61 -0.3
82,754 + H281DRAFT_06193 0.61 +0.2
82,755 - H281DRAFT_06193 0.61 +0.5
82,755 - H281DRAFT_06193 0.61 -0.8
83,097 + +0.3
83,097 + -1.2
83,097 + +1.9
83,108 + -0.1
83,108 + -0.7
83,108 + -0.7
83,202 + H281DRAFT_06194 0.24 -0.7
83,211 - H281DRAFT_06194 0.28 -0.6
83,253 - H281DRAFT_06194 0.50 -0.6
83,342 + +0.4
83,343 - +1.7
83,354 + +0.2
83,377 - +0.7
83,407 - -0.1
83,409 + +0.3
83,409 + -0.4
83,409 + +0.2
83,523 - -0.1
83,523 - +0.3
83,591 + -0.7
83,592 - -0.1
83,598 + -0.3
83,804 + H281DRAFT_06195 0.67 -0.4
83,804 + H281DRAFT_06195 0.67 +0.3
83,805 - H281DRAFT_06195 0.67 -0.3
83,805 - H281DRAFT_06195 0.67 -0.0
83,805 - H281DRAFT_06195 0.67 +0.4
83,806 + H281DRAFT_06195 0.68 +0.3
83,807 - H281DRAFT_06195 0.68 -0.5
83,807 - H281DRAFT_06195 0.68 -0.0
83,860 - H281DRAFT_06195 0.88 -0.1
84,059 + -0.0
84,098 - -0.8
84,098 - +0.1
84,321 + H281DRAFT_06196 0.20 +0.1
84,322 - H281DRAFT_06196 0.20 -0.2
84,557 + H281DRAFT_06196 0.32 +0.1
84,557 + H281DRAFT_06196 0.32 -0.3
84,558 - H281DRAFT_06196 0.32 -0.0
84,678 + H281DRAFT_06196 0.38 +1.0
84,679 - H281DRAFT_06196 0.38 -1.0
84,686 + H281DRAFT_06196 0.39 -0.4
84,686 + H281DRAFT_06196 0.39 -0.3
84,686 + H281DRAFT_06196 0.39 +0.8
84,758 + H281DRAFT_06196 0.42 +0.8
84,759 - H281DRAFT_06196 0.42 -0.2
84,792 - +0.2
84,792 - H281DRAFT_06196 0.44 +0.9

Or see this region's nucleotide sequence