Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05941

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05940 and H281DRAFT_05941 are separated by 36 nucleotidesH281DRAFT_05941 and H281DRAFT_05942 are separated by 99 nucleotides H281DRAFT_05940: H281DRAFT_05940 - polysaccharide transporter, PST family, at 79,311 to 80,615 _05940 H281DRAFT_05941: H281DRAFT_05941 - Glycosyltransferase involved in cell wall bisynthesis, at 80,652 to 81,611 _05941 H281DRAFT_05942: H281DRAFT_05942 - transcriptional regulator, LysR family, at 81,711 to 82,562 _05942 Position (kb) 80 81 82Strain fitness (log2 ratio) -1 0 1at 80.652 kb on - strandat 80.839 kb on - strand, within H281DRAFT_05941at 81.530 kb on + strandat 81.624 kb on - strandat 82.043 kb on - strand, within H281DRAFT_05942at 82.043 kb on - strand, within H281DRAFT_05942at 82.084 kb on - strand, within H281DRAFT_05942at 82.232 kb on + strand, within H281DRAFT_05942at 82.233 kb on - strand, within H281DRAFT_05942at 82.255 kb on + strand, within H281DRAFT_05942

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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80,652 - +0.5
80,839 - H281DRAFT_05941 0.19 +0.3
81,530 + -0.4
81,624 - -0.6
82,043 - H281DRAFT_05942 0.39 +1.5
82,043 - H281DRAFT_05942 0.39 +0.3
82,084 - H281DRAFT_05942 0.44 +0.5
82,232 + H281DRAFT_05942 0.61 -0.1
82,233 - H281DRAFT_05942 0.61 -0.5
82,255 + H281DRAFT_05942 0.64 +0.3

Or see this region's nucleotide sequence