Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05851 and H281DRAFT_05852 are separated by 238 nucleotides H281DRAFT_05852 and H281DRAFT_05853 are separated by 9 nucleotides H281DRAFT_05853 and H281DRAFT_05854 are separated by 141 nucleotides
H281DRAFT_05851: H281DRAFT_05851 - Protein N-acetyltransferase, RimJ/RimL family, at 131,496 to 132,164
_05851
H281DRAFT_05852: H281DRAFT_05852 - transcriptional regulator, TetR family, at 132,403 to 133,014
_05852
H281DRAFT_05853: H281DRAFT_05853 - Protein of unknown function, at 133,024 to 133,839
_05853
H281DRAFT_05854: H281DRAFT_05854 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE, at 133,981 to 135,069
_05854
Position (kb) 133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.025 kb on - strand, within H281DRAFT_05851 at 132.025 kb on - strand, within H281DRAFT_05851 at 132.152 kb on + strand at 132.152 kb on + strand at 132.152 kb on + strand at 132.152 kb on + strand at 132.152 kb on + strand at 132.152 kb on + strand at 132.153 kb on - strand at 132.153 kb on - strand at 132.153 kb on - strand at 132.399 kb on + strand at 132.399 kb on + strand at 132.399 kb on + strand at 132.399 kb on + strand at 132.400 kb on - strand at 132.400 kb on - strand at 132.400 kb on - strand at 132.492 kb on + strand, within H281DRAFT_05852 at 132.576 kb on - strand, within H281DRAFT_05852 at 132.608 kb on - strand, within H281DRAFT_05852 at 132.659 kb on + strand, within H281DRAFT_05852 at 132.659 kb on + strand, within H281DRAFT_05852 at 132.660 kb on - strand, within H281DRAFT_05852 at 132.708 kb on - strand, within H281DRAFT_05852 at 132.819 kb on - strand, within H281DRAFT_05852 at 132.860 kb on + strand, within H281DRAFT_05852 at 132.860 kb on + strand, within H281DRAFT_05852 at 132.861 kb on - strand, within H281DRAFT_05852 at 132.861 kb on - strand, within H281DRAFT_05852 at 132.864 kb on - strand, within H281DRAFT_05852 at 132.864 kb on - strand, within H281DRAFT_05852 at 132.869 kb on + strand, within H281DRAFT_05852 at 133.026 kb on - strand at 133.521 kb on - strand at 133.521 kb on - strand, within H281DRAFT_05853 at 133.523 kb on + strand, within H281DRAFT_05853 at 133.524 kb on - strand, within H281DRAFT_05853 at 133.524 kb on - strand, within H281DRAFT_05853 at 133.524 kb on - strand, within H281DRAFT_05853 at 133.524 kb on - strand, within H281DRAFT_05853 at 133.610 kb on - strand, within H281DRAFT_05853 at 133.610 kb on - strand, within H281DRAFT_05853 at 133.923 kb on + strand at 133.923 kb on + strand at 133.928 kb on + strand at 133.928 kb on + strand at 133.929 kb on - strand at 133.929 kb on - strand at 133.995 kb on - strand at 134.002 kb on + strand at 134.003 kb on - strand at 134.079 kb on - strand at 134.079 kb on - strand at 134.528 kb on + strand, within H281DRAFT_05854 at 134.708 kb on + strand, within H281DRAFT_05854 at 134.708 kb on + strand, within H281DRAFT_05854 at 134.709 kb on - strand, within H281DRAFT_05854
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 132,025 - H281DRAFT_05851 0.79 -0.2 132,025 - H281DRAFT_05851 0.79 -0.5 132,152 + -0.2 132,152 + -0.3 132,152 + +2.7 132,152 + -1.2 132,152 + +0.5 132,152 + -0.9 132,153 - +0.0 132,153 - -0.2 132,153 - +0.2 132,399 + +0.2 132,399 + -0.4 132,399 + -0.5 132,399 + +0.7 132,400 - +0.4 132,400 - -0.2 132,400 - -0.9 132,492 + H281DRAFT_05852 0.15 -0.7 132,576 - H281DRAFT_05852 0.28 +0.1 132,608 - H281DRAFT_05852 0.33 +0.8 132,659 + H281DRAFT_05852 0.42 -1.1 132,659 + H281DRAFT_05852 0.42 -0.8 132,660 - H281DRAFT_05852 0.42 -2.8 132,708 - H281DRAFT_05852 0.50 +0.1 132,819 - H281DRAFT_05852 0.68 -0.5 132,860 + H281DRAFT_05852 0.75 -0.7 132,860 + H281DRAFT_05852 0.75 +0.1 132,861 - H281DRAFT_05852 0.75 -0.7 132,861 - H281DRAFT_05852 0.75 -0.4 132,864 - H281DRAFT_05852 0.75 -0.4 132,864 - H281DRAFT_05852 0.75 -1.2 132,869 + H281DRAFT_05852 0.76 -0.8 133,026 - -0.4 133,521 - +1.9 133,521 - H281DRAFT_05853 0.61 -0.9 133,523 + H281DRAFT_05853 0.61 -0.0 133,524 - H281DRAFT_05853 0.61 -0.3 133,524 - H281DRAFT_05853 0.61 -0.1 133,524 - H281DRAFT_05853 0.61 -0.3 133,524 - H281DRAFT_05853 0.61 -0.1 133,610 - H281DRAFT_05853 0.72 +0.9 133,610 - H281DRAFT_05853 0.72 -0.6 133,923 + -1.9 133,923 + -0.7 133,928 + -0.7 133,928 + +0.6 133,929 - +0.5 133,929 - +1.0 133,995 - +0.0 134,002 + +0.1 134,003 - +0.4 134,079 - -0.9 134,079 - -0.1 134,528 + H281DRAFT_05854 0.50 -2.2 134,708 + H281DRAFT_05854 0.67 -1.8 134,708 + H281DRAFT_05854 0.67 -2.6 134,709 - H281DRAFT_05854 0.67 -0.3
Or see this region's nucleotide sequence