Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05364 and H281DRAFT_05365 are separated by 72 nucleotides H281DRAFT_05365 and H281DRAFT_05366 are separated by 83 nucleotides H281DRAFT_05366 and H281DRAFT_05367 are separated by 111 nucleotides
H281DRAFT_05364: H281DRAFT_05364 - type VI secretion system protein ImpC, at 116,929 to 118,419
_05364
H281DRAFT_05365: H281DRAFT_05365 - type VI secretion system secreted protein Hcp, at 118,492 to 118,995
_05365
H281DRAFT_05366: H281DRAFT_05366 - type VI secretion system protein ImpF, at 119,079 to 119,558
_05366
H281DRAFT_05367: H281DRAFT_05367 - type VI secretion system protein ImpG, at 119,670 to 121,508
_05367
Position (kb) 118
119 Strain fitness (log2 ratio) -2
-1
0
1 at 117.637 kb on + strand, within H281DRAFT_05364 at 117.638 kb on - strand, within H281DRAFT_05364 at 117.747 kb on + strand, within H281DRAFT_05364 at 117.747 kb on + strand, within H281DRAFT_05364 at 117.754 kb on + strand, within H281DRAFT_05364 at 117.754 kb on + strand, within H281DRAFT_05364 at 117.754 kb on + strand, within H281DRAFT_05364 at 117.754 kb on + strand, within H281DRAFT_05364 at 117.937 kb on - strand, within H281DRAFT_05364 at 118.006 kb on + strand, within H281DRAFT_05364 at 118.051 kb on + strand, within H281DRAFT_05364 at 118.102 kb on + strand, within H281DRAFT_05364 at 118.102 kb on + strand, within H281DRAFT_05364 at 118.220 kb on - strand, within H281DRAFT_05364 at 118.418 kb on - strand at 118.691 kb on + strand, within H281DRAFT_05365 at 118.709 kb on - strand, within H281DRAFT_05365 at 118.709 kb on - strand, within H281DRAFT_05365 at 118.802 kb on + strand, within H281DRAFT_05365 at 118.803 kb on - strand, within H281DRAFT_05365 at 118.813 kb on + strand, within H281DRAFT_05365 at 118.813 kb on + strand, within H281DRAFT_05365 at 118.885 kb on + strand, within H281DRAFT_05365 at 118.885 kb on + strand, within H281DRAFT_05365 at 118.886 kb on - strand, within H281DRAFT_05365 at 118.886 kb on - strand, within H281DRAFT_05365 at 118.984 kb on + strand at 118.985 kb on - strand at 118.985 kb on - strand at 119.058 kb on + strand at 119.059 kb on - strand at 119.283 kb on + strand, within H281DRAFT_05366 at 119.283 kb on + strand, within H281DRAFT_05366 at 119.284 kb on - strand, within H281DRAFT_05366 at 119.284 kb on - strand, within H281DRAFT_05366 at 119.284 kb on - strand, within H281DRAFT_05366 at 119.284 kb on - strand, within H281DRAFT_05366 at 119.326 kb on - strand, within H281DRAFT_05366 at 119.386 kb on + strand, within H281DRAFT_05366 at 119.387 kb on - strand, within H281DRAFT_05366 at 119.557 kb on - strand at 119.664 kb on - strand at 119.688 kb on + strand at 119.691 kb on + strand at 119.722 kb on - strand at 119.902 kb on + strand, within H281DRAFT_05367 at 119.902 kb on + strand, within H281DRAFT_05367 at 119.903 kb on - strand, within H281DRAFT_05367 at 119.903 kb on - strand, within H281DRAFT_05367 at 119.903 kb on - strand, within H281DRAFT_05367 at 119.904 kb on + strand, within H281DRAFT_05367 at 119.904 kb on + strand, within H281DRAFT_05367 at 119.914 kb on - strand, within H281DRAFT_05367 at 119.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 117,637 + H281DRAFT_05364 0.47 -0.0 117,638 - H281DRAFT_05364 0.48 +0.2 117,747 + H281DRAFT_05364 0.55 +0.5 117,747 + H281DRAFT_05364 0.55 +0.0 117,754 + H281DRAFT_05364 0.55 +0.7 117,754 + H281DRAFT_05364 0.55 -1.7 117,754 + H281DRAFT_05364 0.55 +1.4 117,754 + H281DRAFT_05364 0.55 -0.1 117,937 - H281DRAFT_05364 0.68 -0.6 118,006 + H281DRAFT_05364 0.72 -0.2 118,051 + H281DRAFT_05364 0.75 +0.3 118,102 + H281DRAFT_05364 0.79 +0.6 118,102 + H281DRAFT_05364 0.79 +0.1 118,220 - H281DRAFT_05364 0.87 -0.5 118,418 - -0.1 118,691 + H281DRAFT_05365 0.39 -0.0 118,709 - H281DRAFT_05365 0.43 -1.0 118,709 - H281DRAFT_05365 0.43 +0.4 118,802 + H281DRAFT_05365 0.62 +0.5 118,803 - H281DRAFT_05365 0.62 -0.0 118,813 + H281DRAFT_05365 0.64 +0.0 118,813 + H281DRAFT_05365 0.64 +0.1 118,885 + H281DRAFT_05365 0.78 +0.2 118,885 + H281DRAFT_05365 0.78 -0.8 118,886 - H281DRAFT_05365 0.78 -0.7 118,886 - H281DRAFT_05365 0.78 -1.6 118,984 + -0.0 118,985 - -0.9 118,985 - -1.0 119,058 + +0.4 119,059 - -0.5 119,283 + H281DRAFT_05366 0.42 +0.3 119,283 + H281DRAFT_05366 0.42 +0.5 119,284 - H281DRAFT_05366 0.43 -1.6 119,284 - H281DRAFT_05366 0.43 -0.9 119,284 - H281DRAFT_05366 0.43 -1.3 119,284 - H281DRAFT_05366 0.43 -0.6 119,326 - H281DRAFT_05366 0.51 -1.7 119,386 + H281DRAFT_05366 0.64 +0.3 119,387 - H281DRAFT_05366 0.64 -1.3 119,557 - -0.1 119,664 - -1.2 119,688 + -0.6 119,691 + +0.4 119,722 - +0.5 119,902 + H281DRAFT_05367 0.13 -0.9 119,902 + H281DRAFT_05367 0.13 -0.7 119,903 - H281DRAFT_05367 0.13 -2.4 119,903 - H281DRAFT_05367 0.13 -0.4 119,903 - H281DRAFT_05367 0.13 -1.5 119,904 + H281DRAFT_05367 0.13 -0.5 119,904 + H281DRAFT_05367 0.13 -0.0 119,914 - H281DRAFT_05367 0.13 -1.0 119,914 - -1.8
Or see this region's nucleotide sequence