Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05019 and H281DRAFT_05020 are separated by 168 nucleotides H281DRAFT_05020 and H281DRAFT_05021 are separated by 163 nucleotides H281DRAFT_05021 and H281DRAFT_05022 are separated by 180 nucleotides
H281DRAFT_05019: H281DRAFT_05019 - hypothetical protein, at 203,122 to 204,849
_05019
H281DRAFT_05020: H281DRAFT_05020 - Signal transduction histidine kinase, at 205,018 to 206,103
_05020
H281DRAFT_05021: H281DRAFT_05021 - Response regulator, at 206,267 to 206,644
_05021
H281DRAFT_05022: H281DRAFT_05022 - two component transcriptional regulator, LuxR family, at 206,825 to 207,511
_05022
Position (kb) 205
206
207 Strain fitness (log2 ratio) -1
0
1 at 204.046 kb on + strand, within H281DRAFT_05019 at 204.173 kb on + strand, within H281DRAFT_05019 at 204.315 kb on + strand, within H281DRAFT_05019 at 204.354 kb on + strand, within H281DRAFT_05019 at 204.948 kb on - strand at 205.107 kb on + strand at 205.811 kb on + strand, within H281DRAFT_05020 at 206.399 kb on + strand, within H281DRAFT_05021 at 206.448 kb on - strand, within H281DRAFT_05021 at 206.711 kb on - strand at 206.738 kb on - strand at 206.738 kb on - strand at 206.741 kb on + strand at 206.820 kb on + strand at 206.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 204,046 + H281DRAFT_05019 0.53 -0.1 204,173 + H281DRAFT_05019 0.61 -0.0 204,315 + H281DRAFT_05019 0.69 +0.7 204,354 + H281DRAFT_05019 0.71 -0.2 204,948 - +0.2 205,107 + -0.2 205,811 + H281DRAFT_05020 0.73 -0.2 206,399 + H281DRAFT_05021 0.35 +0.5 206,448 - H281DRAFT_05021 0.48 +0.5 206,711 - +0.3 206,738 - +0.6 206,738 - -0.6 206,741 + +0.9 206,820 + +0.2 206,843 + +0.3
Or see this region's nucleotide sequence