Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04461 and H281DRAFT_04462 are separated by 140 nucleotides H281DRAFT_04462 and H281DRAFT_04463 are separated by 277 nucleotides
H281DRAFT_04461: H281DRAFT_04461 - monosaccharide ABC transporter membrane protein, CUT2 family, at 184,855 to 186,027
_04461
H281DRAFT_04462: H281DRAFT_04462 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 186,168 to 187,214
_04462
H281DRAFT_04463: H281DRAFT_04463 - transcriptional regulator, RpiR family, at 187,492 to 188,373
_04463
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.580 kb on - strand, within H281DRAFT_04461 at 186.020 kb on - strand at 186.153 kb on - strand at 186.157 kb on - strand at 186.187 kb on + strand at 186.274 kb on + strand, within H281DRAFT_04462 at 186.275 kb on - strand, within H281DRAFT_04462 at 186.386 kb on - strand, within H281DRAFT_04462 at 186.386 kb on - strand, within H281DRAFT_04462 at 186.587 kb on - strand, within H281DRAFT_04462 at 186.650 kb on - strand, within H281DRAFT_04462 at 186.784 kb on + strand, within H281DRAFT_04462 at 186.890 kb on + strand, within H281DRAFT_04462 at 186.891 kb on - strand, within H281DRAFT_04462 at 187.064 kb on + strand, within H281DRAFT_04462 at 187.327 kb on + strand at 187.471 kb on + strand at 187.555 kb on - strand at 187.559 kb on - strand at 187.559 kb on - strand at 187.597 kb on + strand, within H281DRAFT_04463 at 187.597 kb on + strand, within H281DRAFT_04463 at 187.600 kb on - strand, within H281DRAFT_04463 at 187.747 kb on + strand, within H281DRAFT_04463 at 187.747 kb on + strand, within H281DRAFT_04463 at 187.747 kb on + strand, within H281DRAFT_04463 at 187.748 kb on - strand, within H281DRAFT_04463 at 187.749 kb on + strand, within H281DRAFT_04463 at 187.952 kb on - strand, within H281DRAFT_04463 at 187.952 kb on - strand, within H281DRAFT_04463 at 188.000 kb on - strand, within H281DRAFT_04463 at 188.056 kb on + strand, within H281DRAFT_04463 at 188.138 kb on - strand, within H281DRAFT_04463
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 185,580 - H281DRAFT_04461 0.62 +0.1 186,020 - -0.1 186,153 - +1.3 186,157 - -0.4 186,187 + +2.3 186,274 + H281DRAFT_04462 0.10 -1.8 186,275 - H281DRAFT_04462 0.10 -0.3 186,386 - H281DRAFT_04462 0.21 +0.1 186,386 - H281DRAFT_04462 0.21 -2.3 186,587 - H281DRAFT_04462 0.40 -1.0 186,650 - H281DRAFT_04462 0.46 +0.3 186,784 + H281DRAFT_04462 0.59 +0.2 186,890 + H281DRAFT_04462 0.69 +0.0 186,891 - H281DRAFT_04462 0.69 -0.5 187,064 + H281DRAFT_04462 0.86 +0.6 187,327 + -0.1 187,471 + +0.2 187,555 - -1.0 187,559 - -1.0 187,559 - +1.0 187,597 + H281DRAFT_04463 0.12 -1.8 187,597 + H281DRAFT_04463 0.12 +0.0 187,600 - H281DRAFT_04463 0.12 -2.3 187,747 + H281DRAFT_04463 0.29 +1.0 187,747 + H281DRAFT_04463 0.29 +0.2 187,747 + H281DRAFT_04463 0.29 +0.9 187,748 - H281DRAFT_04463 0.29 -1.4 187,749 + H281DRAFT_04463 0.29 -0.0 187,952 - H281DRAFT_04463 0.52 -0.9 187,952 - H281DRAFT_04463 0.52 -0.7 188,000 - H281DRAFT_04463 0.58 -0.9 188,056 + H281DRAFT_04463 0.64 +0.4 188,138 - H281DRAFT_04463 0.73 -1.3
Or see this region's nucleotide sequence