Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04411 and H281DRAFT_04412 are separated by 70 nucleotides H281DRAFT_04412 and H281DRAFT_04413 overlap by 4 nucleotides H281DRAFT_04413 and H281DRAFT_04414 are separated by 17 nucleotides
H281DRAFT_04411: H281DRAFT_04411 - phosphate ABC transporter substrate-binding protein, PhoT family, at 130,311 to 131,342
_04411
H281DRAFT_04412: H281DRAFT_04412 - phosphate ABC transporter membrane protein 1, PhoT family, at 131,413 to 132,534
_04412
H281DRAFT_04413: H281DRAFT_04413 - phosphate ABC transporter membrane protein 2, PhoT family, at 132,531 to 133,427
_04413
H281DRAFT_04414: H281DRAFT_04414 - phosphate ABC transporter ATP-binding protein, PhoT family, at 133,445 to 134,293
_04414
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 130.470 kb on + strand, within H281DRAFT_04411 at 130.471 kb on - strand, within H281DRAFT_04411 at 130.683 kb on + strand, within H281DRAFT_04411 at 130.684 kb on - strand, within H281DRAFT_04411 at 130.684 kb on - strand, within H281DRAFT_04411 at 130.983 kb on - strand, within H281DRAFT_04411 at 130.983 kb on - strand, within H281DRAFT_04411 at 130.983 kb on - strand, within H281DRAFT_04411 at 130.990 kb on - strand, within H281DRAFT_04411 at 130.990 kb on - strand, within H281DRAFT_04411 at 130.990 kb on - strand, within H281DRAFT_04411 at 131.340 kb on + strand at 131.359 kb on - strand at 131.375 kb on + strand at 131.375 kb on + strand at 131.376 kb on - strand at 131.376 kb on - strand at 131.379 kb on + strand at 131.379 kb on + strand at 131.380 kb on - strand at 131.380 kb on - strand at 131.495 kb on - strand at 131.532 kb on + strand, within H281DRAFT_04412 at 131.532 kb on + strand, within H281DRAFT_04412 at 131.532 kb on + strand, within H281DRAFT_04412 at 132.124 kb on + strand, within H281DRAFT_04412 at 132.125 kb on - strand, within H281DRAFT_04412 at 132.216 kb on - strand, within H281DRAFT_04412 at 132.216 kb on - strand, within H281DRAFT_04412 at 132.216 kb on - strand, within H281DRAFT_04412 at 132.216 kb on - strand, within H281DRAFT_04412 at 132.339 kb on - strand, within H281DRAFT_04412 at 132.342 kb on + strand, within H281DRAFT_04412 at 132.423 kb on + strand at 132.424 kb on - strand at 132.424 kb on - strand at 132.424 kb on - strand at 132.424 kb on - strand at 132.424 kb on - strand at 132.694 kb on - strand, within H281DRAFT_04413 at 132.694 kb on - strand, within H281DRAFT_04413 at 132.865 kb on - strand, within H281DRAFT_04413 at 133.016 kb on - strand, within H281DRAFT_04413 at 133.306 kb on - strand at 133.425 kb on + strand at 133.438 kb on + strand at 133.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 130,470 + H281DRAFT_04411 0.15 -1.8 130,471 - H281DRAFT_04411 0.16 -1.0 130,683 + H281DRAFT_04411 0.36 -0.6 130,684 - H281DRAFT_04411 0.36 +1.0 130,684 - H281DRAFT_04411 0.36 -0.2 130,983 - H281DRAFT_04411 0.65 +0.1 130,983 - H281DRAFT_04411 0.65 -3.1 130,983 - H281DRAFT_04411 0.65 +0.2 130,990 - H281DRAFT_04411 0.66 +0.4 130,990 - H281DRAFT_04411 0.66 +0.0 130,990 - H281DRAFT_04411 0.66 +1.2 131,340 + -0.3 131,359 - -0.3 131,375 + -0.7 131,375 + -0.4 131,376 - -0.3 131,376 - -0.2 131,379 + -1.0 131,379 + -2.1 131,380 - -0.3 131,380 - -0.3 131,495 - +0.1 131,532 + H281DRAFT_04412 0.11 -0.1 131,532 + H281DRAFT_04412 0.11 -1.2 131,532 + H281DRAFT_04412 0.11 -0.2 132,124 + H281DRAFT_04412 0.63 -0.9 132,125 - H281DRAFT_04412 0.63 -0.4 132,216 - H281DRAFT_04412 0.72 -0.6 132,216 - H281DRAFT_04412 0.72 -0.9 132,216 - H281DRAFT_04412 0.72 -0.1 132,216 - H281DRAFT_04412 0.72 +0.2 132,339 - H281DRAFT_04412 0.83 -0.0 132,342 + H281DRAFT_04412 0.83 +0.2 132,423 + -1.3 132,424 - -0.3 132,424 - -0.5 132,424 - +0.2 132,424 - +0.1 132,424 - -0.5 132,694 - H281DRAFT_04413 0.18 -1.0 132,694 - H281DRAFT_04413 0.18 -0.4 132,865 - H281DRAFT_04413 0.37 +0.0 133,016 - H281DRAFT_04413 0.54 -0.4 133,306 - -1.1 133,425 + -0.6 133,438 + -1.6 133,438 + -1.4
Or see this region's nucleotide sequence