Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04288

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04287 and H281DRAFT_04288 are separated by 165 nucleotidesH281DRAFT_04288 and H281DRAFT_04289 are separated by 85 nucleotides H281DRAFT_04287: H281DRAFT_04287 - D-amino-acid dehydrogenase, at 3,227 to 4,543 _04287 H281DRAFT_04288: H281DRAFT_04288 - transcriptional regulator, AsnC family, at 4,709 to 5,209 _04288 H281DRAFT_04289: H281DRAFT_04289 - DNA repair photolyase, at 5,295 to 6,440 _04289 Position (kb) 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1at 3.735 kb on + strand, within H281DRAFT_04287at 3.777 kb on + strand, within H281DRAFT_04287at 4.054 kb on - strand, within H281DRAFT_04287at 4.156 kb on - strand, within H281DRAFT_04287at 4.203 kb on + strand, within H281DRAFT_04287at 4.203 kb on + strand, within H281DRAFT_04287at 4.203 kb on + strand, within H281DRAFT_04287at 4.242 kb on + strand, within H281DRAFT_04287at 4.494 kb on + strandat 4.495 kb on - strandat 4.495 kb on - strandat 4.495 kb on - strandat 4.543 kb on + strandat 4.544 kb on - strandat 4.544 kb on - strandat 4.589 kb on + strandat 4.649 kb on + strandat 4.650 kb on - strandat 4.650 kb on - strandat 4.650 kb on - strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.653 kb on - strandat 4.676 kb on + strandat 4.676 kb on + strandat 4.714 kb on + strandat 4.714 kb on + strandat 4.715 kb on - strandat 4.889 kb on + strand, within H281DRAFT_04288at 4.890 kb on - strand, within H281DRAFT_04288at 4.890 kb on - strand, within H281DRAFT_04288at 4.932 kb on + strand, within H281DRAFT_04288at 5.049 kb on - strand, within H281DRAFT_04288at 5.049 kb on - strand, within H281DRAFT_04288at 5.144 kb on + strand, within H281DRAFT_04288at 5.144 kb on + strand, within H281DRAFT_04288at 5.145 kb on - strand, within H281DRAFT_04288at 5.207 kb on + strandat 5.207 kb on + strandat 5.208 kb on - strandat 5.280 kb on - strandat 5.280 kb on - strandat 5.291 kb on - strandat 5.416 kb on + strand, within H281DRAFT_04289at 5.471 kb on + strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strandat 5.579 kb on + strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.583 kb on + strand, within H281DRAFT_04289at 5.583 kb on + strand, within H281DRAFT_04289at 5.584 kb on - strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.653 kb on - strand, within H281DRAFT_04289at 5.706 kb on + strand, within H281DRAFT_04289at 5.802 kb on - strand, within H281DRAFT_04289at 5.802 kb on - strand, within H281DRAFT_04289at 5.876 kb on + strandat 5.897 kb on + strand, within H281DRAFT_04289at 5.897 kb on + strand, within H281DRAFT_04289at 5.919 kb on - strand, within H281DRAFT_04289at 5.923 kb on + strand, within H281DRAFT_04289at 5.923 kb on + strand, within H281DRAFT_04289at 5.924 kb on - strand, within H281DRAFT_04289at 5.942 kb on + strand, within H281DRAFT_04289at 6.117 kb on + strand, within H281DRAFT_04289at 6.118 kb on - strand, within H281DRAFT_04289at 6.118 kb on - strand, within H281DRAFT_04289at 6.119 kb on + strand, within H281DRAFT_04289

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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3,735 + H281DRAFT_04287 0.39 -0.7
3,777 + H281DRAFT_04287 0.42 -1.3
4,054 - H281DRAFT_04287 0.63 -0.6
4,156 - H281DRAFT_04287 0.71 -1.2
4,203 + H281DRAFT_04287 0.74 -2.2
4,203 + H281DRAFT_04287 0.74 -1.1
4,203 + H281DRAFT_04287 0.74 -1.4
4,242 + H281DRAFT_04287 0.77 -2.2
4,494 + -0.8
4,495 - +0.5
4,495 - -0.4
4,495 - -1.4
4,543 + -1.0
4,544 - -2.3
4,544 - -0.3
4,589 + -0.8
4,649 + -0.4
4,650 - -0.8
4,650 - -0.4
4,650 - -1.8
4,652 + -0.5
4,652 + -0.5
4,652 + +0.5
4,652 + -0.7
4,653 - +1.0
4,676 + +0.0
4,676 + -3.4
4,714 + -0.8
4,714 + -0.9
4,715 - -1.0
4,889 + H281DRAFT_04288 0.36 -0.6
4,890 - H281DRAFT_04288 0.36 -1.2
4,890 - H281DRAFT_04288 0.36 -0.3
4,932 + H281DRAFT_04288 0.45 -0.1
5,049 - H281DRAFT_04288 0.68 -0.8
5,049 - H281DRAFT_04288 0.68 -1.9
5,144 + H281DRAFT_04288 0.87 -0.2
5,144 + H281DRAFT_04288 0.87 -0.6
5,145 - H281DRAFT_04288 0.87 -0.9
5,207 + -1.0
5,207 + +0.3
5,208 - -0.2
5,280 - +0.1
5,280 - -0.7
5,291 - +0.3
5,416 + H281DRAFT_04289 0.11 +0.4
5,471 + H281DRAFT_04289 0.15 +0.2
5,472 - H281DRAFT_04289 0.15 +0.1
5,472 - H281DRAFT_04289 0.15 +0.9
5,472 - H281DRAFT_04289 0.15 -0.3
5,516 + H281DRAFT_04289 0.19 +0.6
5,516 + H281DRAFT_04289 0.19 -0.1
5,516 + H281DRAFT_04289 0.19 +0.0
5,516 + H281DRAFT_04289 0.19 -0.3
5,517 - H281DRAFT_04289 0.19 -0.1
5,517 - H281DRAFT_04289 0.19 -0.1
5,517 - H281DRAFT_04289 0.19 +0.1
5,517 - H281DRAFT_04289 0.19 -0.3
5,579 + H281DRAFT_04289 0.25 +0.2
5,579 + H281DRAFT_04289 0.25 -0.3
5,579 + H281DRAFT_04289 0.25 +0.1
5,579 + +1.6
5,579 + H281DRAFT_04289 0.25 +0.5
5,580 - H281DRAFT_04289 0.25 +0.0
5,580 - H281DRAFT_04289 0.25 +1.0
5,580 - H281DRAFT_04289 0.25 -1.0
5,580 - H281DRAFT_04289 0.25 +0.7
5,583 + H281DRAFT_04289 0.25 +0.0
5,583 + H281DRAFT_04289 0.25 -0.3
5,584 - H281DRAFT_04289 0.25 -0.4
5,610 + H281DRAFT_04289 0.27 +0.1
5,610 + H281DRAFT_04289 0.27 +0.0
5,610 + H281DRAFT_04289 0.27 -0.1
5,611 - H281DRAFT_04289 0.28 +0.4
5,611 - H281DRAFT_04289 0.28 +0.3
5,611 - H281DRAFT_04289 0.28 -0.3
5,611 - H281DRAFT_04289 0.28 +0.2
5,652 + H281DRAFT_04289 0.31 +0.4
5,652 + H281DRAFT_04289 0.31 +1.7
5,652 + H281DRAFT_04289 0.31 -0.1
5,652 + H281DRAFT_04289 0.31 -0.2
5,652 + H281DRAFT_04289 0.31 +0.5
5,652 + H281DRAFT_04289 0.31 -0.3
5,653 - H281DRAFT_04289 0.31 +0.1
5,706 + H281DRAFT_04289 0.36 +0.3
5,802 - H281DRAFT_04289 0.44 +0.2
5,802 - H281DRAFT_04289 0.44 -0.1
5,876 + +0.4
5,897 + H281DRAFT_04289 0.53 -0.0
5,897 + H281DRAFT_04289 0.53 +0.6
5,919 - H281DRAFT_04289 0.54 -0.6
5,923 + H281DRAFT_04289 0.55 +0.4
5,923 + H281DRAFT_04289 0.55 +0.6
5,924 - H281DRAFT_04289 0.55 -0.3
5,942 + H281DRAFT_04289 0.56 +0.7
6,117 + H281DRAFT_04289 0.72 -1.5
6,118 - H281DRAFT_04289 0.72 -0.2
6,118 - H281DRAFT_04289 0.72 -0.8
6,119 + H281DRAFT_04289 0.72 -0.2

Or see this region's nucleotide sequence