Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04179 and H281DRAFT_04180 are separated by 4 nucleotides H281DRAFT_04180 and H281DRAFT_04181 are separated by 302 nucleotides
H281DRAFT_04179: H281DRAFT_04179 - two-component system, OmpR family, sensor kinase, at 295,960 to 297,261
_04179
H281DRAFT_04180: H281DRAFT_04180 - two component transcriptional regulator, winged helix family, at 297,266 to 297,928
_04180
H281DRAFT_04181: H281DRAFT_04181 - D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4), at 298,231 to 299,928
_04181
Position (kb) 297
298 Strain fitness (log2 ratio) -2
-1
0
1
2 at 296.367 kb on - strand, within H281DRAFT_04179 at 296.955 kb on + strand, within H281DRAFT_04179 at 297.015 kb on - strand, within H281DRAFT_04179 at 297.015 kb on - strand, within H281DRAFT_04179 at 297.018 kb on - strand, within H281DRAFT_04179 at 297.018 kb on - strand, within H281DRAFT_04179 at 297.018 kb on - strand, within H281DRAFT_04179 at 297.179 kb on + strand at 297.289 kb on - strand at 297.364 kb on + strand, within H281DRAFT_04180 at 297.364 kb on + strand, within H281DRAFT_04180 at 297.364 kb on + strand, within H281DRAFT_04180 at 297.364 kb on + strand, within H281DRAFT_04180 at 297.364 kb on + strand, within H281DRAFT_04180 at 297.365 kb on - strand, within H281DRAFT_04180 at 297.365 kb on - strand, within H281DRAFT_04180 at 297.365 kb on - strand, within H281DRAFT_04180 at 297.365 kb on - strand, within H281DRAFT_04180 at 297.393 kb on + strand, within H281DRAFT_04180 at 297.393 kb on + strand, within H281DRAFT_04180 at 297.394 kb on - strand, within H281DRAFT_04180 at 297.596 kb on - strand, within H281DRAFT_04180 at 297.636 kb on + strand, within H281DRAFT_04180 at 297.636 kb on + strand, within H281DRAFT_04180 at 297.743 kb on + strand, within H281DRAFT_04180 at 297.744 kb on - strand, within H281DRAFT_04180 at 297.966 kb on - strand at 298.030 kb on + strand at 298.030 kb on + strand at 298.031 kb on - strand at 298.031 kb on - strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.080 kb on + strand at 298.633 kb on + strand, within H281DRAFT_04181 at 298.633 kb on + strand, within H281DRAFT_04181 at 298.633 kb on + strand, within H281DRAFT_04181 at 298.633 kb on + strand, within H281DRAFT_04181 at 298.732 kb on + strand, within H281DRAFT_04181 at 298.733 kb on - strand, within H281DRAFT_04181 at 298.820 kb on + strand, within H281DRAFT_04181 at 298.908 kb on + strand, within H281DRAFT_04181 at 298.908 kb on + strand, within H281DRAFT_04181
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 296,367 - H281DRAFT_04179 0.31 +0.8 296,955 + H281DRAFT_04179 0.76 +0.4 297,015 - H281DRAFT_04179 0.81 -0.3 297,015 - H281DRAFT_04179 0.81 +0.5 297,018 - H281DRAFT_04179 0.81 +0.4 297,018 - H281DRAFT_04179 0.81 +0.4 297,018 - H281DRAFT_04179 0.81 +0.6 297,179 + +0.1 297,289 - -1.0 297,364 + H281DRAFT_04180 0.15 -1.1 297,364 + H281DRAFT_04180 0.15 -0.2 297,364 + H281DRAFT_04180 0.15 -1.2 297,364 + H281DRAFT_04180 0.15 -1.0 297,364 + H281DRAFT_04180 0.15 -0.2 297,365 - H281DRAFT_04180 0.15 -1.3 297,365 - H281DRAFT_04180 0.15 -0.5 297,365 - H281DRAFT_04180 0.15 -0.2 297,365 - H281DRAFT_04180 0.15 -0.4 297,393 + H281DRAFT_04180 0.19 -0.1 297,393 + H281DRAFT_04180 0.19 +0.2 297,394 - H281DRAFT_04180 0.19 -0.7 297,596 - H281DRAFT_04180 0.50 +0.2 297,636 + H281DRAFT_04180 0.56 -0.9 297,636 + H281DRAFT_04180 0.56 -2.1 297,743 + H281DRAFT_04180 0.72 -0.7 297,744 - H281DRAFT_04180 0.72 -0.2 297,966 - -0.3 298,030 + +0.5 298,030 + +0.3 298,031 - +1.5 298,031 - +0.3 298,077 + +0.5 298,077 + -0.1 298,077 + -0.7 298,080 + +0.3 298,633 + H281DRAFT_04181 0.24 +0.3 298,633 + H281DRAFT_04181 0.24 -0.2 298,633 + H281DRAFT_04181 0.24 +0.1 298,633 + H281DRAFT_04181 0.24 +1.9 298,732 + H281DRAFT_04181 0.30 -0.1 298,733 - H281DRAFT_04181 0.30 -0.4 298,820 + H281DRAFT_04181 0.35 +0.1 298,908 + H281DRAFT_04181 0.40 -0.6 298,908 + H281DRAFT_04181 0.40 -0.3
Or see this region's nucleotide sequence