Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03902

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03900 and H281DRAFT_03901 are separated by 280 nucleotidesH281DRAFT_03901 and H281DRAFT_03902 are separated by 91 nucleotides H281DRAFT_03900: H281DRAFT_03900 - Uncharacterized conserved protein YfaP, DUF2135 family, at 436,641 to 437,441 _03900 H281DRAFT_03901: H281DRAFT_03901 - hypothetical protein, at 437,722 to 438,114 _03901 H281DRAFT_03902: H281DRAFT_03902 - RNA polymerase, sigma 70 subunit, RpoD, at 438,206 to 440,200 _03902 Position (kb) 438 439 440 441Strain fitness (log2 ratio) -2 -1 0 1 2at 437.238 kb on + strand, within H281DRAFT_03900at 437.239 kb on - strand, within H281DRAFT_03900at 437.239 kb on - strand, within H281DRAFT_03900at 437.268 kb on + strand, within H281DRAFT_03900at 437.268 kb on + strand, within H281DRAFT_03900at 437.287 kb on - strand, within H281DRAFT_03900at 437.287 kb on - strand, within H281DRAFT_03900at 437.518 kb on - strandat 437.633 kb on - strandat 437.633 kb on - strandat 437.675 kb on + strandat 437.675 kb on + strandat 437.832 kb on + strand, within H281DRAFT_03901at 437.833 kb on - strand, within H281DRAFT_03901at 437.912 kb on + strand, within H281DRAFT_03901at 437.913 kb on - strand, within H281DRAFT_03901at 438.050 kb on - strand, within H281DRAFT_03901at 438.109 kb on - strandat 438.367 kb on + strandat 439.071 kb on + strand, within H281DRAFT_03902at 439.315 kb on - strand, within H281DRAFT_03902at 439.315 kb on - strand, within H281DRAFT_03902at 439.366 kb on - strand, within H281DRAFT_03902at 439.408 kb on + strand, within H281DRAFT_03902at 439.534 kb on + strand, within H281DRAFT_03902at 439.758 kb on + strand, within H281DRAFT_03902at 439.758 kb on + strandat 439.758 kb on + strand, within H281DRAFT_03902at 439.759 kb on - strand, within H281DRAFT_03902at 439.759 kb on - strand, within H281DRAFT_03902at 439.905 kb on + strand, within H281DRAFT_03902at 439.905 kb on + strand, within H281DRAFT_03902at 439.906 kb on - strand, within H281DRAFT_03902at 440.131 kb on + strandat 440.155 kb on - strandat 440.203 kb on - strandat 440.203 kb on - strandat 440.295 kb on + strandat 440.297 kb on + strandat 440.297 kb on + strandat 440.297 kb on + strandat 440.298 kb on - strandat 440.298 kb on - strandat 440.298 kb on - strandat 440.298 kb on - strandat 440.298 kb on - strandat 440.381 kb on + strandat 440.383 kb on + strandat 440.384 kb on - strandat 440.385 kb on + strandat 440.442 kb on + strandat 440.543 kb on + strandat 440.544 kb on - strandat 440.545 kb on + strandat 440.545 kb on + strandat 440.598 kb on + strandat 440.598 kb on + strandat 440.599 kb on - strandat 440.602 kb on - strandat 440.603 kb on + strandat 440.603 kb on + strandat 440.603 kb on + strandat 440.603 kb on + strandat 440.604 kb on - strandat 440.604 kb on - strandat 440.604 kb on - strandat 440.604 kb on - strandat 440.604 kb on - strandat 440.607 kb on + strandat 440.607 kb on + strandat 440.608 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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437,238 + H281DRAFT_03900 0.75 +0.0
437,239 - H281DRAFT_03900 0.75 -0.4
437,239 - H281DRAFT_03900 0.75 -0.5
437,268 + H281DRAFT_03900 0.78 -0.3
437,268 + H281DRAFT_03900 0.78 +0.2
437,287 - H281DRAFT_03900 0.81 -0.8
437,287 - H281DRAFT_03900 0.81 +0.1
437,518 - +0.4
437,633 - +0.2
437,633 - -0.9
437,675 + +2.1
437,675 + +0.3
437,832 + H281DRAFT_03901 0.28 -0.5
437,833 - H281DRAFT_03901 0.28 +0.1
437,912 + H281DRAFT_03901 0.48 +0.7
437,913 - H281DRAFT_03901 0.49 +0.1
438,050 - H281DRAFT_03901 0.83 +0.1
438,109 - +1.4
438,367 + -1.0
439,071 + H281DRAFT_03902 0.43 +0.0
439,315 - H281DRAFT_03902 0.56 -2.7
439,315 - H281DRAFT_03902 0.56 +1.1
439,366 - H281DRAFT_03902 0.58 +0.4
439,408 + H281DRAFT_03902 0.60 -1.1
439,534 + H281DRAFT_03902 0.67 -0.9
439,758 + H281DRAFT_03902 0.78 -0.6
439,758 + -0.9
439,758 + H281DRAFT_03902 0.78 -0.8
439,759 - H281DRAFT_03902 0.78 -0.6
439,759 - H281DRAFT_03902 0.78 -0.9
439,905 + H281DRAFT_03902 0.85 -2.4
439,905 + H281DRAFT_03902 0.85 +0.6
439,906 - H281DRAFT_03902 0.85 -0.7
440,131 + +1.1
440,155 - +2.1
440,203 - -1.6
440,203 - -0.7
440,295 + +1.1
440,297 + -0.5
440,297 + -0.4
440,297 + +0.8
440,298 - -0.5
440,298 - -0.1
440,298 - -0.3
440,298 - -0.0
440,298 - +0.1
440,381 + +0.4
440,383 + +0.1
440,384 - +0.7
440,385 + -0.5
440,442 + -0.1
440,543 + -0.2
440,544 - +0.1
440,545 + -0.9
440,545 + -0.7
440,598 + +0.4
440,598 + -0.2
440,599 - -0.3
440,602 - +0.0
440,603 + +0.1
440,603 + +0.7
440,603 + -0.2
440,603 + -2.2
440,604 - +0.0
440,604 - +0.5
440,604 - -0.1
440,604 - -0.0
440,604 - +0.5
440,607 + +0.6
440,607 + +0.5
440,608 - -0.2

Or see this region's nucleotide sequence