Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03824 and H281DRAFT_03825 are separated by 150 nucleotides H281DRAFT_03825 and H281DRAFT_03826 are separated by 65 nucleotides
H281DRAFT_03824: H281DRAFT_03824 - zinc transporter, at 351,084 to 352,121
_03824
H281DRAFT_03825: H281DRAFT_03825 - diguanylate cyclase (GGDEF) domain-containing protein, at 352,272 to 353,465
_03825
H281DRAFT_03826: H281DRAFT_03826 - uronate dehydrogenase, at 353,531 to 354,382
_03826
Position (kb) 352
353
354 Strain fitness (log2 ratio) -2
-1
0
1 at 351.446 kb on + strand, within H281DRAFT_03824 at 351.459 kb on + strand, within H281DRAFT_03824 at 351.998 kb on + strand, within H281DRAFT_03824 at 352.258 kb on - strand at 352.355 kb on + strand at 352.587 kb on + strand, within H281DRAFT_03825 at 352.588 kb on - strand, within H281DRAFT_03825 at 352.650 kb on + strand, within H281DRAFT_03825 at 352.650 kb on + strand, within H281DRAFT_03825 at 353.070 kb on - strand, within H281DRAFT_03825 at 353.188 kb on + strand, within H281DRAFT_03825 at 353.460 kb on + strand at 353.460 kb on + strand at 353.734 kb on - strand, within H281DRAFT_03826 at 353.868 kb on - strand, within H281DRAFT_03826 at 354.035 kb on + strand, within H281DRAFT_03826 at 354.060 kb on + strand at 354.069 kb on + strand, within H281DRAFT_03826 at 354.069 kb on + strand, within H281DRAFT_03826 at 354.402 kb on - strand at 354.406 kb on + strand at 354.410 kb on + strand at 354.410 kb on + strand at 354.410 kb on + strand at 354.411 kb on - strand at 354.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 351,446 + H281DRAFT_03824 0.35 -0.0 351,459 + H281DRAFT_03824 0.36 +0.2 351,998 + H281DRAFT_03824 0.88 -0.6 352,258 - -0.4 352,355 + -0.1 352,587 + H281DRAFT_03825 0.26 +1.1 352,588 - H281DRAFT_03825 0.26 -1.9 352,650 + H281DRAFT_03825 0.32 +0.4 352,650 + H281DRAFT_03825 0.32 -0.2 353,070 - H281DRAFT_03825 0.67 -0.2 353,188 + H281DRAFT_03825 0.77 +0.5 353,460 + +0.6 353,460 + +0.5 353,734 - H281DRAFT_03826 0.24 +0.4 353,868 - H281DRAFT_03826 0.40 +0.5 354,035 + H281DRAFT_03826 0.59 +0.3 354,060 + +0.1 354,069 + H281DRAFT_03826 0.63 +0.2 354,069 + H281DRAFT_03826 0.63 +0.8 354,402 - -0.1 354,406 + +0.1 354,410 + -0.9 354,410 + -0.1 354,410 + +0.9 354,411 - +0.4 354,414 + +0.1
Or see this region's nucleotide sequence