Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02800 and H281DRAFT_02801 are separated by 233 nucleotides H281DRAFT_02801 and H281DRAFT_02802 are separated by 183 nucleotides H281DRAFT_02802 and H281DRAFT_02803 are separated by 308 nucleotides
H281DRAFT_02800: H281DRAFT_02800 - 6-phosphogluconate dehydrogenase (decarboxylating), at 388,418 to 389,455
_02800
H281DRAFT_02801: H281DRAFT_02801 - MFS transporter, SET family, sugar efflux transporter, at 389,689 to 391,032
_02801
H281DRAFT_02802: H281DRAFT_02802 - hypothetical protein, at 391,216 to 391,716
_02802
H281DRAFT_02803: H281DRAFT_02803 - thioredoxin 1, at 392,025 to 392,345
_02803
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -1
0
1
2
3 at 388.750 kb on - strand, within H281DRAFT_02800 at 388.834 kb on + strand, within H281DRAFT_02800 at 388.851 kb on + strand, within H281DRAFT_02800 at 388.870 kb on - strand, within H281DRAFT_02800 at 389.115 kb on + strand, within H281DRAFT_02800 at 389.115 kb on + strand, within H281DRAFT_02800 at 389.116 kb on - strand, within H281DRAFT_02800 at 389.116 kb on - strand, within H281DRAFT_02800 at 389.166 kb on + strand, within H281DRAFT_02800 at 389.167 kb on - strand, within H281DRAFT_02800 at 389.170 kb on - strand, within H281DRAFT_02800 at 389.170 kb on - strand, within H281DRAFT_02800 at 389.425 kb on + strand at 389.426 kb on - strand at 389.447 kb on + strand at 389.448 kb on - strand at 389.448 kb on - strand at 389.500 kb on - strand at 389.500 kb on - strand at 389.595 kb on + strand at 389.625 kb on + strand at 389.979 kb on - strand, within H281DRAFT_02801 at 389.979 kb on - strand, within H281DRAFT_02801 at 390.240 kb on - strand, within H281DRAFT_02801 at 390.240 kb on - strand, within H281DRAFT_02801 at 390.313 kb on - strand, within H281DRAFT_02801 at 390.329 kb on - strand, within H281DRAFT_02801 at 390.689 kb on - strand, within H281DRAFT_02801 at 390.723 kb on - strand, within H281DRAFT_02801 at 390.739 kb on + strand, within H281DRAFT_02801 at 390.832 kb on - strand, within H281DRAFT_02801 at 391.153 kb on - strand at 391.153 kb on - strand at 391.218 kb on - strand at 391.218 kb on - strand at 391.259 kb on + strand at 391.260 kb on - strand at 391.260 kb on - strand at 391.266 kb on - strand, within H281DRAFT_02802 at 391.405 kb on + strand, within H281DRAFT_02802 at 391.405 kb on + strand, within H281DRAFT_02802 at 391.636 kb on + strand, within H281DRAFT_02802 at 391.637 kb on - strand, within H281DRAFT_02802 at 391.804 kb on - strand at 391.804 kb on - strand at 391.809 kb on + strand at 391.809 kb on + strand at 391.809 kb on + strand at 391.810 kb on - strand at 391.810 kb on - strand at 391.810 kb on - strand at 391.810 kb on - strand at 391.810 kb on - strand at 391.810 kb on - strand at 391.813 kb on + strand at 391.814 kb on - strand at 391.814 kb on - strand at 391.883 kb on + strand at 391.925 kb on - strand at 391.931 kb on + strand at 391.931 kb on + strand at 391.932 kb on - strand at 391.932 kb on - strand at 391.937 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 388,750 - H281DRAFT_02800 0.32 -1.2 388,834 + H281DRAFT_02800 0.40 +0.9 388,851 + H281DRAFT_02800 0.42 -0.1 388,870 - H281DRAFT_02800 0.44 +0.1 389,115 + H281DRAFT_02800 0.67 -0.2 389,115 + H281DRAFT_02800 0.67 +1.0 389,116 - H281DRAFT_02800 0.67 +0.7 389,116 - H281DRAFT_02800 0.67 +0.2 389,166 + H281DRAFT_02800 0.72 -0.1 389,167 - H281DRAFT_02800 0.72 -0.8 389,170 - H281DRAFT_02800 0.72 +0.5 389,170 - H281DRAFT_02800 0.72 -0.3 389,425 + +0.7 389,426 - +0.2 389,447 + -0.1 389,448 - +0.8 389,448 - +0.4 389,500 - -0.5 389,500 - -1.2 389,595 + +0.0 389,625 + -0.6 389,979 - H281DRAFT_02801 0.22 -0.6 389,979 - H281DRAFT_02801 0.22 -0.6 390,240 - H281DRAFT_02801 0.41 +1.5 390,240 - H281DRAFT_02801 0.41 -0.2 390,313 - H281DRAFT_02801 0.46 +0.4 390,329 - H281DRAFT_02801 0.48 +0.1 390,689 - H281DRAFT_02801 0.74 +0.9 390,723 - H281DRAFT_02801 0.77 +0.4 390,739 + H281DRAFT_02801 0.78 +0.7 390,832 - H281DRAFT_02801 0.85 +0.4 391,153 - -0.1 391,153 - -0.1 391,218 - -0.1 391,218 - -0.2 391,259 + -0.7 391,260 - +0.2 391,260 - -1.1 391,266 - H281DRAFT_02802 0.10 -0.6 391,405 + H281DRAFT_02802 0.38 +0.9 391,405 + H281DRAFT_02802 0.38 +0.3 391,636 + H281DRAFT_02802 0.84 +0.1 391,637 - H281DRAFT_02802 0.84 -0.1 391,804 - +0.5 391,804 - -0.1 391,809 + +0.3 391,809 + +0.0 391,809 + +0.3 391,810 - +2.9 391,810 - -0.1 391,810 - +2.5 391,810 - +0.5 391,810 - +0.1 391,810 - -0.0 391,813 + +0.0 391,814 - +0.1 391,814 - +0.1 391,883 + +0.2 391,925 - -0.5 391,931 + +0.2 391,931 + -0.3 391,932 - -0.2 391,932 - -0.1 391,937 + -0.2
Or see this region's nucleotide sequence