Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02788 and H281DRAFT_02789 are separated by 90 nucleotides H281DRAFT_02789 and H281DRAFT_02790 are separated by 10 nucleotides H281DRAFT_02790 and H281DRAFT_02791 are separated by 204 nucleotides
H281DRAFT_02788: H281DRAFT_02788 - Acyl-CoA dehydrogenase, at 377,641 to 378,906
_02788
H281DRAFT_02789: H281DRAFT_02789 - hypothetical protein, at 378,997 to 379,515
_02789
H281DRAFT_02790: H281DRAFT_02790 - hypothetical protein, at 379,526 to 380,227
_02790
H281DRAFT_02791: H281DRAFT_02791 - apolipoprotein D and lipocalin family protein, at 380,432 to 381,004
_02791
Position (kb) 379
380
381 Strain fitness (log2 ratio) -1
0
1 at 379.126 kb on - strand, within H281DRAFT_02789 at 379.273 kb on + strand, within H281DRAFT_02789 at 379.276 kb on - strand, within H281DRAFT_02789 at 379.276 kb on - strand, within H281DRAFT_02789 at 379.556 kb on + strand at 380.315 kb on - strand at 380.315 kb on - strand at 380.320 kb on - strand at 380.471 kb on - strand at 380.585 kb on + strand, within H281DRAFT_02791 at 380.660 kb on + strand, within H281DRAFT_02791 at 380.999 kb on - strand at 380.999 kb on - strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.206 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 379,126 - H281DRAFT_02789 0.25 -0.2 379,273 + H281DRAFT_02789 0.53 +0.3 379,276 - H281DRAFT_02789 0.54 +0.9 379,276 - H281DRAFT_02789 0.54 -0.0 379,556 + +0.6 380,315 - -0.4 380,315 - -1.4 380,320 - +0.1 380,471 - +0.7 380,585 + H281DRAFT_02791 0.27 +1.4 380,660 + H281DRAFT_02791 0.40 -0.1 380,999 - -0.5 380,999 - +1.3 381,206 + -1.4 381,206 + -0.8 381,206 + +0.6 381,206 + -0.2 381,206 + -0.1
Or see this region's nucleotide sequence