Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02354

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02352 and H281DRAFT_02353 are separated by 148 nucleotidesH281DRAFT_02353 and H281DRAFT_02354 are separated by 94 nucleotidesH281DRAFT_02354 and H281DRAFT_02355 are separated by 4 nucleotides H281DRAFT_02352: H281DRAFT_02352 - general secretion pathway protein G, at 509,619 to 510,083 _02352 H281DRAFT_02353: H281DRAFT_02353 - general secretion pathway protein C, at 510,232 to 510,654 _02353 H281DRAFT_02354: H281DRAFT_02354 - general secretion pathway protein F, at 510,749 to 511,966 _02354 H281DRAFT_02355: H281DRAFT_02355 - type II secretion system protein E (GspE), at 511,971 to 513,530 _02355 Position (kb) 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 509.872 kb on + strand, within H281DRAFT_02352at 510.017 kb on + strand, within H281DRAFT_02352at 510.017 kb on + strand, within H281DRAFT_02352at 510.083 kb on + strandat 510.083 kb on + strandat 510.084 kb on - strandat 510.084 kb on - strandat 510.092 kb on - strandat 510.175 kb on + strandat 510.175 kb on + strandat 510.175 kb on + strandat 510.176 kb on - strandat 510.176 kb on - strandat 510.176 kb on - strandat 510.221 kb on + strandat 510.221 kb on + strandat 510.221 kb on + strandat 510.222 kb on - strandat 510.222 kb on - strandat 510.228 kb on + strandat 510.228 kb on + strandat 510.229 kb on - strandat 510.229 kb on - strandat 510.229 kb on - strandat 510.608 kb on + strandat 510.643 kb on + strandat 510.644 kb on - strandat 510.644 kb on - strandat 510.644 kb on - strandat 510.832 kb on + strandat 510.833 kb on - strandat 510.833 kb on - strandat 510.985 kb on + strand, within H281DRAFT_02354at 510.986 kb on - strand, within H281DRAFT_02354at 510.986 kb on - strand, within H281DRAFT_02354at 511.257 kb on + strand, within H281DRAFT_02354at 511.258 kb on - strand, within H281DRAFT_02354at 511.258 kb on - strand, within H281DRAFT_02354at 511.395 kb on + strand, within H281DRAFT_02354at 511.395 kb on + strand, within H281DRAFT_02354at 511.396 kb on - strand, within H281DRAFT_02354at 511.450 kb on - strand, within H281DRAFT_02354at 511.500 kb on + strand, within H281DRAFT_02354at 511.500 kb on + strand, within H281DRAFT_02354at 511.501 kb on - strand, within H281DRAFT_02354at 511.501 kb on - strand, within H281DRAFT_02354at 511.501 kb on - strand, within H281DRAFT_02354at 511.501 kb on - strand, within H281DRAFT_02354at 511.541 kb on - strand, within H281DRAFT_02354at 511.569 kb on + strand, within H281DRAFT_02354at 511.668 kb on + strand, within H281DRAFT_02354at 511.669 kb on - strand, within H281DRAFT_02354at 511.972 kb on + strandat 511.973 kb on - strandat 512.105 kb on + strandat 512.105 kb on + strandat 512.105 kb on + strandat 512.105 kb on + strandat 512.106 kb on - strandat 512.152 kb on + strand, within H281DRAFT_02355at 512.152 kb on + strand, within H281DRAFT_02355at 512.153 kb on - strand, within H281DRAFT_02355at 512.153 kb on - strand, within H281DRAFT_02355at 512.153 kb on - strand, within H281DRAFT_02355at 512.295 kb on + strand, within H281DRAFT_02355at 512.295 kb on + strand, within H281DRAFT_02355at 512.296 kb on - strand, within H281DRAFT_02355at 512.317 kb on + strand, within H281DRAFT_02355at 512.318 kb on - strand, within H281DRAFT_02355at 512.372 kb on + strand, within H281DRAFT_02355at 512.372 kb on + strand, within H281DRAFT_02355at 512.381 kb on + strandat 512.382 kb on - strand, within H281DRAFT_02355at 512.560 kb on + strand, within H281DRAFT_02355at 512.560 kb on + strand, within H281DRAFT_02355at 512.560 kb on + strand, within H281DRAFT_02355at 512.561 kb on - strand, within H281DRAFT_02355at 512.626 kb on + strand, within H281DRAFT_02355at 512.627 kb on - strand, within H281DRAFT_02355at 512.627 kb on - strand, within H281DRAFT_02355at 512.627 kb on - strand, within H281DRAFT_02355at 512.859 kb on - strand, within H281DRAFT_02355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
509,872 + H281DRAFT_02352 0.54 -0.1
510,017 + H281DRAFT_02352 0.86 +0.6
510,017 + H281DRAFT_02352 0.86 +0.1
510,083 + +0.1
510,083 + -0.4
510,084 - +0.8
510,084 - +0.3
510,092 - -0.5
510,175 + -0.7
510,175 + +0.5
510,175 + +0.1
510,176 - -0.9
510,176 - +0.2
510,176 - -0.2
510,221 + +0.3
510,221 + +6.9
510,221 + +0.9
510,222 - +0.0
510,222 - -2.7
510,228 + -1.6
510,228 + -0.1
510,229 - -1.0
510,229 - -0.5
510,229 - -0.6
510,608 + +0.1
510,643 + -1.5
510,644 - -1.3
510,644 - -0.6
510,644 - -0.7
510,832 + +0.7
510,833 - -0.9
510,833 - +0.9
510,985 + H281DRAFT_02354 0.19 +0.4
510,986 - H281DRAFT_02354 0.19 +0.3
510,986 - H281DRAFT_02354 0.19 +1.2
511,257 + H281DRAFT_02354 0.42 +0.4
511,258 - H281DRAFT_02354 0.42 +0.1
511,258 - H281DRAFT_02354 0.42 -0.7
511,395 + H281DRAFT_02354 0.53 +0.1
511,395 + H281DRAFT_02354 0.53 -0.2
511,396 - H281DRAFT_02354 0.53 -0.1
511,450 - H281DRAFT_02354 0.58 +0.4
511,500 + H281DRAFT_02354 0.62 +0.7
511,500 + H281DRAFT_02354 0.62 +0.4
511,501 - H281DRAFT_02354 0.62 +0.6
511,501 - H281DRAFT_02354 0.62 +0.6
511,501 - H281DRAFT_02354 0.62 +0.1
511,501 - H281DRAFT_02354 0.62 +0.4
511,541 - H281DRAFT_02354 0.65 +0.3
511,569 + H281DRAFT_02354 0.67 +0.3
511,668 + H281DRAFT_02354 0.75 +0.2
511,669 - H281DRAFT_02354 0.76 +0.4
511,972 + +0.8
511,973 - -0.4
512,105 + +1.3
512,105 + +0.3
512,105 + +2.1
512,105 + +0.9
512,106 - +0.3
512,152 + H281DRAFT_02355 0.12 +0.3
512,152 + H281DRAFT_02355 0.12 -0.3
512,153 - H281DRAFT_02355 0.12 +0.8
512,153 - H281DRAFT_02355 0.12 +0.6
512,153 - H281DRAFT_02355 0.12 -0.3
512,295 + H281DRAFT_02355 0.21 +0.5
512,295 + H281DRAFT_02355 0.21 +0.2
512,296 - H281DRAFT_02355 0.21 +1.0
512,317 + H281DRAFT_02355 0.22 +0.7
512,318 - H281DRAFT_02355 0.22 +0.4
512,372 + H281DRAFT_02355 0.26 +0.3
512,372 + H281DRAFT_02355 0.26 -1.5
512,381 + +1.1
512,382 - H281DRAFT_02355 0.26 +0.4
512,560 + H281DRAFT_02355 0.38 +0.9
512,560 + H281DRAFT_02355 0.38 -0.1
512,560 + H281DRAFT_02355 0.38 +0.3
512,561 - H281DRAFT_02355 0.38 +0.4
512,626 + H281DRAFT_02355 0.42 +0.2
512,627 - H281DRAFT_02355 0.42 +0.6
512,627 - H281DRAFT_02355 0.42 +0.4
512,627 - H281DRAFT_02355 0.42 +0.1
512,859 - H281DRAFT_02355 0.57 +0.0

Or see this region's nucleotide sequence