Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01921 and H281DRAFT_01922 are separated by 119 nucleotides H281DRAFT_01922 and H281DRAFT_01923 overlap by 1 nucleotides H281DRAFT_01923 and H281DRAFT_01924 overlap by 4 nucleotides
H281DRAFT_01921: H281DRAFT_01921 - Kef-type potassium/proton antiporter, CPA2 family, at 38,142 to 40,145
_01921
H281DRAFT_01922: H281DRAFT_01922 - arabinose-5-phosphate isomerase, at 40,265 to 41,314
_01922
H281DRAFT_01923: H281DRAFT_01923 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase), at 41,314 to 41,874
_01923
H281DRAFT_01924: H281DRAFT_01924 - lipopolysaccharide export system protein LptC, at 41,871 to 42,470
_01924
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1 at 39.641 kb on + strand, within H281DRAFT_01921 at 39.642 kb on - strand, within H281DRAFT_01921 at 39.695 kb on + strand, within H281DRAFT_01921 at 39.717 kb on + strand, within H281DRAFT_01921 at 39.809 kb on + strand, within H281DRAFT_01921 at 39.809 kb on + strand, within H281DRAFT_01921 at 39.810 kb on - strand, within H281DRAFT_01921 at 39.810 kb on - strand, within H281DRAFT_01921 at 39.810 kb on - strand, within H281DRAFT_01921 at 39.876 kb on + strand, within H281DRAFT_01921 at 39.877 kb on - strand, within H281DRAFT_01921 at 39.877 kb on - strand, within H281DRAFT_01921 at 39.877 kb on - strand, within H281DRAFT_01921 at 40.048 kb on + strand at 40.230 kb on + strand at 40.232 kb on + strand at 40.232 kb on + strand at 40.319 kb on + strand at 40.321 kb on + strand at 40.933 kb on + strand, within H281DRAFT_01922 at 40.933 kb on + strand, within H281DRAFT_01922 at 40.933 kb on + strand, within H281DRAFT_01922 at 40.933 kb on + strand, within H281DRAFT_01922 at 40.933 kb on + strand, within H281DRAFT_01922 at 40.933 kb on + strand, within H281DRAFT_01922 at 40.933 kb on + strand, within H281DRAFT_01922 at 40.937 kb on + strand, within H281DRAFT_01922 at 40.937 kb on + strand, within H281DRAFT_01922 at 40.937 kb on + strand, within H281DRAFT_01922 at 40.937 kb on + strand, within H281DRAFT_01922 at 40.938 kb on - strand, within H281DRAFT_01922 at 40.938 kb on - strand, within H281DRAFT_01922 at 40.938 kb on - strand, within H281DRAFT_01922 at 40.938 kb on - strand, within H281DRAFT_01922 at 40.938 kb on - strand, within H281DRAFT_01922 at 41.387 kb on + strand, within H281DRAFT_01923 at 41.387 kb on + strand, within H281DRAFT_01923 at 41.566 kb on + strand, within H281DRAFT_01923 at 41.566 kb on + strand, within H281DRAFT_01923 at 41.566 kb on + strand, within H281DRAFT_01923
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 39,641 + H281DRAFT_01921 0.75 +1.2 39,642 - H281DRAFT_01921 0.75 -0.0 39,695 + H281DRAFT_01921 0.77 +0.2 39,717 + H281DRAFT_01921 0.79 -0.1 39,809 + H281DRAFT_01921 0.83 +0.0 39,809 + H281DRAFT_01921 0.83 +0.1 39,810 - H281DRAFT_01921 0.83 +1.3 39,810 - H281DRAFT_01921 0.83 +0.0 39,810 - H281DRAFT_01921 0.83 -0.6 39,876 + H281DRAFT_01921 0.87 -0.0 39,877 - H281DRAFT_01921 0.87 +0.1 39,877 - H281DRAFT_01921 0.87 +0.3 39,877 - H281DRAFT_01921 0.87 +0.4 40,048 + -0.7 40,230 + +0.0 40,232 + -0.5 40,232 + -0.2 40,319 + +0.0 40,321 + +0.1 40,933 + H281DRAFT_01922 0.64 -0.1 40,933 + H281DRAFT_01922 0.64 -1.5 40,933 + H281DRAFT_01922 0.64 +0.1 40,933 + H281DRAFT_01922 0.64 -0.9 40,933 + H281DRAFT_01922 0.64 +0.0 40,933 + H281DRAFT_01922 0.64 +0.2 40,933 + H281DRAFT_01922 0.64 -1.1 40,937 + H281DRAFT_01922 0.64 -0.7 40,937 + H281DRAFT_01922 0.64 -0.3 40,937 + H281DRAFT_01922 0.64 -0.2 40,937 + H281DRAFT_01922 0.64 -2.2 40,938 - H281DRAFT_01922 0.64 -1.7 40,938 - H281DRAFT_01922 0.64 -1.7 40,938 - H281DRAFT_01922 0.64 -1.1 40,938 - H281DRAFT_01922 0.64 -2.0 40,938 - H281DRAFT_01922 0.64 -1.2 41,387 + H281DRAFT_01923 0.13 -0.4 41,387 + H281DRAFT_01923 0.13 -1.7 41,566 + H281DRAFT_01923 0.45 +0.2 41,566 + H281DRAFT_01923 0.45 +0.3 41,566 + H281DRAFT_01923 0.45 -0.5
Or see this region's nucleotide sequence