Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01909 and H281DRAFT_01910 are separated by 305 nucleotides H281DRAFT_01910 and H281DRAFT_01911 are separated by 67 nucleotides H281DRAFT_01911 and H281DRAFT_01912 are separated by 168 nucleotides
H281DRAFT_01909: H281DRAFT_01909 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 21,937 to 23,589
_01909
H281DRAFT_01910: H281DRAFT_01910 - hypothetical protein, at 23,895 to 24,695
_01910
H281DRAFT_01911: H281DRAFT_01911 - single-strand binding protein, at 24,763 to 25,302
_01911
H281DRAFT_01912: H281DRAFT_01912 - Predicted arabinose efflux permease, MFS family, at 25,471 to 26,736
_01912
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1 at 23.046 kb on - strand, within H281DRAFT_01909 at 23.111 kb on + strand, within H281DRAFT_01909 at 23.111 kb on + strand, within H281DRAFT_01909 at 23.230 kb on - strand, within H281DRAFT_01909 at 23.280 kb on - strand, within H281DRAFT_01909 at 23.280 kb on - strand, within H281DRAFT_01909 at 23.378 kb on + strand at 23.378 kb on + strand, within H281DRAFT_01909 at 23.379 kb on - strand, within H281DRAFT_01909 at 23.379 kb on - strand, within H281DRAFT_01909 at 23.379 kb on - strand, within H281DRAFT_01909 at 23.459 kb on + strand at 23.460 kb on - strand at 23.460 kb on - strand at 23.460 kb on - strand at 23.460 kb on - strand at 23.460 kb on - strand at 23.635 kb on + strand at 23.727 kb on - strand at 23.749 kb on + strand at 23.786 kb on + strand at 23.852 kb on + strand at 23.852 kb on + strand at 23.852 kb on + strand at 23.853 kb on - strand at 23.894 kb on + strand at 23.894 kb on + strand at 23.894 kb on + strand at 23.894 kb on + strand at 23.894 kb on + strand at 23.894 kb on + strand at 23.894 kb on + strand at 23.894 kb on + strand at 23.895 kb on - strand at 23.905 kb on + strand at 23.905 kb on + strand at 24.265 kb on - strand, within H281DRAFT_01910 at 24.340 kb on + strand, within H281DRAFT_01910 at 24.514 kb on + strand, within H281DRAFT_01910 at 24.603 kb on + strand, within H281DRAFT_01910 at 24.603 kb on + strand, within H281DRAFT_01910 at 24.604 kb on - strand, within H281DRAFT_01910 at 24.604 kb on - strand, within H281DRAFT_01910 at 24.604 kb on - strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.607 kb on + strand, within H281DRAFT_01910 at 24.608 kb on - strand, within H281DRAFT_01910 at 24.608 kb on - strand, within H281DRAFT_01910 at 24.608 kb on - strand, within H281DRAFT_01910 at 24.608 kb on - strand, within H281DRAFT_01910 at 24.623 kb on + strand at 24.623 kb on + strand at 24.624 kb on - strand at 24.624 kb on - strand at 24.624 kb on - strand at 25.446 kb on - strand at 25.446 kb on - strand at 25.518 kb on + strand at 25.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 23,046 - H281DRAFT_01909 0.67 -0.2 23,111 + H281DRAFT_01909 0.71 -1.2 23,111 + H281DRAFT_01909 0.71 +0.1 23,230 - H281DRAFT_01909 0.78 -1.2 23,280 - H281DRAFT_01909 0.81 -0.9 23,280 - H281DRAFT_01909 0.81 -0.6 23,378 + +0.5 23,378 + H281DRAFT_01909 0.87 -0.5 23,379 - H281DRAFT_01909 0.87 -0.7 23,379 - H281DRAFT_01909 0.87 -1.3 23,379 - H281DRAFT_01909 0.87 -1.4 23,459 + -0.3 23,460 - -1.5 23,460 - -0.7 23,460 - -1.5 23,460 - -1.1 23,460 - -1.2 23,635 + -1.7 23,727 - -0.7 23,749 + +0.3 23,786 + +0.2 23,852 + +0.5 23,852 + -0.3 23,852 + -0.0 23,853 - -0.4 23,894 + +0.8 23,894 + -0.2 23,894 + +0.6 23,894 + -0.0 23,894 + -0.2 23,894 + +0.6 23,894 + +0.1 23,894 + -0.6 23,895 - +0.7 23,905 + -0.6 23,905 + -0.9 24,265 - H281DRAFT_01910 0.46 +0.9 24,340 + H281DRAFT_01910 0.56 -0.4 24,514 + H281DRAFT_01910 0.77 -1.7 24,603 + H281DRAFT_01910 0.88 -0.8 24,603 + H281DRAFT_01910 0.88 +0.7 24,604 - H281DRAFT_01910 0.89 -0.1 24,604 - H281DRAFT_01910 0.89 +1.3 24,604 - H281DRAFT_01910 0.89 -0.1 24,607 + H281DRAFT_01910 0.89 +0.2 24,607 + H281DRAFT_01910 0.89 +0.2 24,607 + H281DRAFT_01910 0.89 +0.6 24,607 + H281DRAFT_01910 0.89 -0.6 24,607 + H281DRAFT_01910 0.89 +0.1 24,607 + H281DRAFT_01910 0.89 -1.7 24,608 - H281DRAFT_01910 0.89 +0.1 24,608 - H281DRAFT_01910 0.89 +0.7 24,608 - H281DRAFT_01910 0.89 -0.6 24,608 - H281DRAFT_01910 0.89 +0.1 24,623 + -1.0 24,623 + -0.9 24,624 - -0.3 24,624 - -0.9 24,624 - -0.2 25,446 - +0.6 25,446 - -0.2 25,518 + -2.1 25,519 - -1.2
Or see this region's nucleotide sequence