Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01659 and H281DRAFT_01660 are separated by 87 nucleotides H281DRAFT_01660 and H281DRAFT_01661 are separated by 303 nucleotides H281DRAFT_01661 and H281DRAFT_01662 are separated by 126 nucleotides H281DRAFT_01662 and H281DRAFT_01663 overlap by 4 nucleotides
H281DRAFT_01659: H281DRAFT_01659 - 3-oxoacyl-[acyl-carrier protein] reductase, at 539,835 to 540,578
_01659
H281DRAFT_01660: H281DRAFT_01660 - 4-hydroxyphenylacetate 3-monooxygenase reductase component (EC 1.14.13.3), at 540,666 to 541,211
_01660
H281DRAFT_01661: H281DRAFT_01661 - DNA-binding transcriptional regulator, LysR family, at 541,515 to 542,420
_01661
H281DRAFT_01662: H281DRAFT_01662 - 4-oxalocrotonate tautomerase, at 542,547 to 542,759
_01662
H281DRAFT_01663: H281DRAFT_01663 - 2-keto-4-pentenoate hydratase, at 542,756 to 543,565
_01663
Position (kb) 541
542
543 Strain fitness (log2 ratio) -1
0
1 at 540.604 kb on - strand at 540.901 kb on + strand, within H281DRAFT_01660 at 540.901 kb on + strand, within H281DRAFT_01660 at 540.902 kb on - strand, within H281DRAFT_01660 at 540.902 kb on - strand, within H281DRAFT_01660 at 540.902 kb on - strand, within H281DRAFT_01660 at 541.152 kb on + strand, within H281DRAFT_01660 at 541.554 kb on + strand at 541.912 kb on + strand, within H281DRAFT_01661 at 542.043 kb on - strand, within H281DRAFT_01661 at 542.289 kb on - strand, within H281DRAFT_01661 at 542.289 kb on - strand, within H281DRAFT_01661 at 542.420 kb on + strand at 542.421 kb on - strand at 542.507 kb on + strand at 542.715 kb on - strand, within H281DRAFT_01662 at 542.819 kb on + strand at 543.199 kb on + strand, within H281DRAFT_01663
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 540,604 - -1.5 540,901 + H281DRAFT_01660 0.43 -0.8 540,901 + H281DRAFT_01660 0.43 -0.6 540,902 - H281DRAFT_01660 0.43 +0.3 540,902 - H281DRAFT_01660 0.43 -0.3 540,902 - H281DRAFT_01660 0.43 -0.1 541,152 + H281DRAFT_01660 0.89 +0.2 541,554 + +0.8 541,912 + H281DRAFT_01661 0.44 -1.4 542,043 - H281DRAFT_01661 0.58 -0.6 542,289 - H281DRAFT_01661 0.85 +0.1 542,289 - H281DRAFT_01661 0.85 -1.2 542,420 + +0.1 542,421 - +0.4 542,507 + -0.6 542,715 - H281DRAFT_01662 0.79 +0.3 542,819 + -0.1 543,199 + H281DRAFT_01663 0.55 -0.4
Or see this region's nucleotide sequence