Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01074 and H281DRAFT_01075 are separated by 106 nucleotides H281DRAFT_01075 and H281DRAFT_01076 overlap by 4 nucleotides H281DRAFT_01076 and H281DRAFT_01077 are separated by 39 nucleotides
H281DRAFT_01074: H281DRAFT_01074 - catechol 1,2-dioxygenase, at 1,206,665 to 1,207,600
_01074
H281DRAFT_01075: H281DRAFT_01075 - benzoate 1,2-dioxygenase, alpha subunit, at 1,207,707 to 1,209,065
_01075
H281DRAFT_01076: H281DRAFT_01076 - benzoate/toluate 1,2-dioxygenase beta subunit, at 1,209,062 to 1,209,550
_01076
H281DRAFT_01077: H281DRAFT_01077 - benzoate/toluate 1,2-dioxygenase reductase subunit, at 1,209,590 to 1,210,612
_01077
Position (kb) 1207
1208
1209
1210 Strain fitness (log2 ratio) -1
0
1 at 1206.992 kb on + strand, within H281DRAFT_01074 at 1206.992 kb on + strand, within H281DRAFT_01074 at 1206.993 kb on - strand, within H281DRAFT_01074 at 1207.360 kb on + strand, within H281DRAFT_01074 at 1207.827 kb on + strand at 1207.911 kb on + strand, within H281DRAFT_01075 at 1207.912 kb on - strand, within H281DRAFT_01075 at 1208.184 kb on + strand, within H281DRAFT_01075 at 1208.324 kb on + strand, within H281DRAFT_01075 at 1208.798 kb on - strand, within H281DRAFT_01075 at 1208.798 kb on - strand, within H281DRAFT_01075 at 1209.515 kb on + strand at 1209.580 kb on - strand at 1209.600 kb on - strand at 1209.780 kb on - strand, within H281DRAFT_01077 at 1209.783 kb on + strand, within H281DRAFT_01077 at 1209.783 kb on + strand, within H281DRAFT_01077
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,206,992 + H281DRAFT_01074 0.35 -0.3 1,206,992 + H281DRAFT_01074 0.35 -0.5 1,206,993 - H281DRAFT_01074 0.35 -0.4 1,207,360 + H281DRAFT_01074 0.74 -0.1 1,207,827 + -0.4 1,207,911 + H281DRAFT_01075 0.15 +0.1 1,207,912 - H281DRAFT_01075 0.15 +1.0 1,208,184 + H281DRAFT_01075 0.35 +0.2 1,208,324 + H281DRAFT_01075 0.45 +0.3 1,208,798 - H281DRAFT_01075 0.80 +0.6 1,208,798 - H281DRAFT_01075 0.80 -0.9 1,209,515 + +0.6 1,209,580 - +0.0 1,209,600 - +0.3 1,209,780 - H281DRAFT_01077 0.19 -1.2 1,209,783 + H281DRAFT_01077 0.19 -0.1 1,209,783 + H281DRAFT_01077 0.19 -0.6
Or see this region's nucleotide sequence