Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06480

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06479 and H281DRAFT_06480 overlap by 4 nucleotidesH281DRAFT_06480 and H281DRAFT_06481 are separated by 2 nucleotides H281DRAFT_06479: H281DRAFT_06479 - arginine succinyltransferase, at 16,180 to 17,238 _06479 H281DRAFT_06480: H281DRAFT_06480 - arginine succinyltransferase, at 17,235 to 18,272 _06480 H281DRAFT_06481: H281DRAFT_06481 - succinylglutamic semialdehyde dehydrogenase, at 18,275 to 19,738 _06481 Position (kb) 17 18 19Strain fitness (log2 ratio) -2 -1 0 1at 16.621 kb on + strand, within H281DRAFT_06479at 16.888 kb on + strand, within H281DRAFT_06479at 17.515 kb on + strand, within H281DRAFT_06480at 17.515 kb on + strandat 17.811 kb on + strand, within H281DRAFT_06480at 17.871 kb on + strand, within H281DRAFT_06480

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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16,621 + H281DRAFT_06479 0.42 -1.3
16,888 + H281DRAFT_06479 0.67 -1.6
17,515 + H281DRAFT_06480 0.27 -1.4
17,515 + +0.4
17,811 + H281DRAFT_06480 0.55 -1.8
17,871 + H281DRAFT_06480 0.61 -0.2

Or see this region's nucleotide sequence