Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06288

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06286 and H281DRAFT_06287 are separated by 28 nucleotidesH281DRAFT_06287 and H281DRAFT_06288 are separated by 275 nucleotidesH281DRAFT_06288 and H281DRAFT_06289 overlap by 4 nucleotidesH281DRAFT_06289 and H281DRAFT_06290 are separated by 247 nucleotides H281DRAFT_06286: H281DRAFT_06286 - Thiol-disulfide isomerase or thioredoxin, at 68,087 to 68,623 _06286 H281DRAFT_06287: H281DRAFT_06287 - hypothetical protein, at 68,652 to 69,305 _06287 H281DRAFT_06288: H281DRAFT_06288 - UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 69,581 to 70,975 _06288 H281DRAFT_06289: H281DRAFT_06289 - hypothetical protein, at 70,972 to 71,574 _06289 H281DRAFT_06290: H281DRAFT_06290 - exoribonuclease-2, at 71,822 to 73,960 _06290 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 68.653 kb on + strandat 68.654 kb on - strandat 68.773 kb on + strand, within H281DRAFT_06287at 68.774 kb on - strand, within H281DRAFT_06287at 68.854 kb on + strand, within H281DRAFT_06287at 68.893 kb on + strand, within H281DRAFT_06287at 68.917 kb on + strand, within H281DRAFT_06287at 68.917 kb on + strand, within H281DRAFT_06287at 68.917 kb on + strand, within H281DRAFT_06287at 68.917 kb on + strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strand, within H281DRAFT_06287at 68.918 kb on - strandat 68.925 kb on + strand, within H281DRAFT_06287at 68.926 kb on - strand, within H281DRAFT_06287at 69.010 kb on + strand, within H281DRAFT_06287at 69.018 kb on - strand, within H281DRAFT_06287at 69.109 kb on + strand, within H281DRAFT_06287at 69.214 kb on + strand, within H281DRAFT_06287at 69.316 kb on + strandat 69.317 kb on - strandat 69.317 kb on - strandat 69.317 kb on - strandat 69.317 kb on - strandat 69.319 kb on + strandat 69.319 kb on + strandat 69.319 kb on + strandat 69.320 kb on - strandat 69.320 kb on - strandat 69.538 kb on - strandat 69.580 kb on + strandat 69.580 kb on + strandat 69.580 kb on + strandat 69.580 kb on + strandat 69.580 kb on + strandat 69.580 kb on + strandat 69.581 kb on - strandat 69.581 kb on - strandat 69.581 kb on - strandat 69.581 kb on - strandat 69.581 kb on - strandat 69.586 kb on + strandat 69.587 kb on - strandat 69.681 kb on + strandat 69.681 kb on + strandat 69.682 kb on - strandat 69.682 kb on - strandat 69.683 kb on + strandat 69.684 kb on - strandat 69.796 kb on - strand, within H281DRAFT_06288at 69.846 kb on - strand, within H281DRAFT_06288at 69.846 kb on - strand, within H281DRAFT_06288at 70.067 kb on + strand, within H281DRAFT_06288at 70.067 kb on + strand, within H281DRAFT_06288at 70.376 kb on + strand, within H281DRAFT_06288at 70.376 kb on + strand, within H281DRAFT_06288at 70.377 kb on - strand, within H281DRAFT_06288at 70.554 kb on + strand, within H281DRAFT_06288at 70.555 kb on - strand, within H281DRAFT_06288at 70.555 kb on - strand, within H281DRAFT_06288at 70.571 kb on + strand, within H281DRAFT_06288at 70.648 kb on + strandat 70.648 kb on + strandat 70.648 kb on + strand, within H281DRAFT_06288at 70.981 kb on + strandat 70.981 kb on + strandat 70.981 kb on + strandat 70.982 kb on - strandat 71.194 kb on + strand, within H281DRAFT_06289at 71.194 kb on + strand, within H281DRAFT_06289at 71.194 kb on + strand, within H281DRAFT_06289at 71.381 kb on - strand, within H281DRAFT_06289at 71.383 kb on + strand, within H281DRAFT_06289at 71.383 kb on + strand, within H281DRAFT_06289at 71.383 kb on + strand, within H281DRAFT_06289at 71.384 kb on - strand, within H281DRAFT_06289at 71.384 kb on - strand, within H281DRAFT_06289at 71.384 kb on - strand, within H281DRAFT_06289at 71.384 kb on - strand, within H281DRAFT_06289at 71.457 kb on + strand, within H281DRAFT_06289at 71.457 kb on + strand, within H281DRAFT_06289at 71.457 kb on + strand, within H281DRAFT_06289at 71.503 kb on + strand, within H281DRAFT_06289at 71.503 kb on + strand, within H281DRAFT_06289at 71.504 kb on - strand, within H281DRAFT_06289at 71.504 kb on - strand, within H281DRAFT_06289at 71.582 kb on + strandat 71.714 kb on + strandat 71.714 kb on + strandat 71.715 kb on - strandat 71.715 kb on - strandat 71.715 kb on - strandat 71.717 kb on + strandat 71.718 kb on - strandat 71.718 kb on - strandat 71.771 kb on - strandat 71.816 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
68,653 + -0.9
68,654 - +0.9
68,773 + H281DRAFT_06287 0.19 -0.4
68,774 - H281DRAFT_06287 0.19 +1.7
68,854 + H281DRAFT_06287 0.31 -0.0
68,893 + H281DRAFT_06287 0.37 -1.3
68,917 + H281DRAFT_06287 0.41 -1.4
68,917 + H281DRAFT_06287 0.41 -0.7
68,917 + H281DRAFT_06287 0.41 -0.6
68,917 + H281DRAFT_06287 0.41 -1.6
68,918 - H281DRAFT_06287 0.41 +0.7
68,918 - H281DRAFT_06287 0.41 +0.7
68,918 - H281DRAFT_06287 0.41 +1.5
68,918 - H281DRAFT_06287 0.41 -0.6
68,918 - H281DRAFT_06287 0.41 +1.0
68,918 - H281DRAFT_06287 0.41 -0.1
68,918 - +0.1
68,925 + H281DRAFT_06287 0.42 -2.5
68,926 - H281DRAFT_06287 0.42 +2.7
69,010 + H281DRAFT_06287 0.55 -2.4
69,018 - H281DRAFT_06287 0.56 -0.4
69,109 + H281DRAFT_06287 0.70 -0.2
69,214 + H281DRAFT_06287 0.86 -2.6
69,316 + +0.3
69,317 - -0.7
69,317 - +0.3
69,317 - +2.0
69,317 - +0.1
69,319 + -0.1
69,319 + -1.4
69,319 + +1.5
69,320 - +1.2
69,320 - -0.6
69,538 - -1.4
69,580 + -0.3
69,580 + -0.5
69,580 + +0.2
69,580 + +0.1
69,580 + -0.9
69,580 + +0.2
69,581 - -0.0
69,581 - -0.9
69,581 - +1.7
69,581 - +0.7
69,581 - +0.2
69,586 + -0.5
69,587 - -2.1
69,681 + -0.1
69,681 + -1.6
69,682 - -0.7
69,682 - -1.9
69,683 + -0.9
69,684 - -0.6
69,796 - H281DRAFT_06288 0.15 +0.5
69,846 - H281DRAFT_06288 0.19 -2.0
69,846 - H281DRAFT_06288 0.19 -1.2
70,067 + H281DRAFT_06288 0.35 -1.2
70,067 + H281DRAFT_06288 0.35 -1.5
70,376 + H281DRAFT_06288 0.57 -2.1
70,376 + H281DRAFT_06288 0.57 -2.3
70,377 - H281DRAFT_06288 0.57 -2.3
70,554 + H281DRAFT_06288 0.70 -1.3
70,555 - H281DRAFT_06288 0.70 +0.8
70,555 - H281DRAFT_06288 0.70 -0.1
70,571 + H281DRAFT_06288 0.71 -0.9
70,648 + +4.4
70,648 + +0.7
70,648 + H281DRAFT_06288 0.76 -2.1
70,981 + +0.1
70,981 + +0.1
70,981 + -1.5
70,982 - +1.0
71,194 + H281DRAFT_06289 0.37 -1.0
71,194 + H281DRAFT_06289 0.37 -0.5
71,194 + H281DRAFT_06289 0.37 +0.2
71,381 - H281DRAFT_06289 0.68 -0.9
71,383 + H281DRAFT_06289 0.68 +1.0
71,383 + H281DRAFT_06289 0.68 +3.1
71,383 + H281DRAFT_06289 0.68 -0.3
71,384 - H281DRAFT_06289 0.68 +0.8
71,384 - H281DRAFT_06289 0.68 -0.1
71,384 - H281DRAFT_06289 0.68 +0.2
71,384 - H281DRAFT_06289 0.68 +0.8
71,457 + H281DRAFT_06289 0.80 +0.9
71,457 + H281DRAFT_06289 0.80 -0.2
71,457 + H281DRAFT_06289 0.80 -0.7
71,503 + H281DRAFT_06289 0.88 -2.4
71,503 + H281DRAFT_06289 0.88 -0.1
71,504 - H281DRAFT_06289 0.88 -2.1
71,504 - H281DRAFT_06289 0.88 +1.0
71,582 + +1.3
71,714 + +1.1
71,714 + +0.4
71,715 - +0.1
71,715 - +0.0
71,715 - -1.4
71,717 + -0.5
71,718 - -0.4
71,718 - -0.8
71,771 - -0.6
71,816 + +0.1

Or see this region's nucleotide sequence