Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06284 and H281DRAFT_06285 are separated by 73 nucleotides H281DRAFT_06285 and H281DRAFT_06286 are separated by 194 nucleotides H281DRAFT_06286 and H281DRAFT_06287 are separated by 28 nucleotides H281DRAFT_06287 and H281DRAFT_06288 are separated by 275 nucleotides
H281DRAFT_06284: H281DRAFT_06284 - biotin carboxyl carrier protein, at 66,890 to 67,363
_06284
H281DRAFT_06285: H281DRAFT_06285 - 3-dehydroquinate dehydratase, at 67,437 to 67,892
_06285
H281DRAFT_06286: H281DRAFT_06286 - Thiol-disulfide isomerase or thioredoxin, at 68,087 to 68,623
_06286
H281DRAFT_06287: H281DRAFT_06287 - hypothetical protein, at 68,652 to 69,305
_06287
H281DRAFT_06288: H281DRAFT_06288 - UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 69,581 to 70,975
_06288
Position (kb) 68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 67.422 kb on - strand at 67.434 kb on - strand at 67.490 kb on - strand, within H281DRAFT_06285 at 67.490 kb on - strand, within H281DRAFT_06285 at 68.201 kb on - strand, within H281DRAFT_06286 at 68.247 kb on + strand, within H281DRAFT_06286 at 68.247 kb on + strand, within H281DRAFT_06286 at 68.248 kb on - strand, within H281DRAFT_06286 at 68.248 kb on - strand at 68.572 kb on - strand at 68.572 kb on - strand at 68.653 kb on + strand at 68.654 kb on - strand at 68.773 kb on + strand, within H281DRAFT_06287 at 68.774 kb on - strand, within H281DRAFT_06287 at 68.854 kb on + strand, within H281DRAFT_06287 at 68.893 kb on + strand, within H281DRAFT_06287 at 68.917 kb on + strand, within H281DRAFT_06287 at 68.917 kb on + strand, within H281DRAFT_06287 at 68.917 kb on + strand, within H281DRAFT_06287 at 68.917 kb on + strand, within H281DRAFT_06287 at 68.918 kb on - strand, within H281DRAFT_06287 at 68.918 kb on - strand, within H281DRAFT_06287 at 68.918 kb on - strand, within H281DRAFT_06287 at 68.918 kb on - strand, within H281DRAFT_06287 at 68.918 kb on - strand, within H281DRAFT_06287 at 68.918 kb on - strand, within H281DRAFT_06287 at 68.918 kb on - strand at 68.925 kb on + strand, within H281DRAFT_06287 at 68.926 kb on - strand, within H281DRAFT_06287 at 69.010 kb on + strand, within H281DRAFT_06287 at 69.018 kb on - strand, within H281DRAFT_06287 at 69.109 kb on + strand, within H281DRAFT_06287 at 69.214 kb on + strand, within H281DRAFT_06287 at 69.316 kb on + strand at 69.317 kb on - strand at 69.317 kb on - strand at 69.317 kb on - strand at 69.317 kb on - strand at 69.319 kb on + strand at 69.319 kb on + strand at 69.319 kb on + strand at 69.320 kb on - strand at 69.320 kb on - strand at 69.538 kb on - strand at 69.580 kb on + strand at 69.580 kb on + strand at 69.580 kb on + strand at 69.580 kb on + strand at 69.580 kb on + strand at 69.580 kb on + strand at 69.581 kb on - strand at 69.581 kb on - strand at 69.581 kb on - strand at 69.581 kb on - strand at 69.581 kb on - strand at 69.586 kb on + strand at 69.587 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 67,422 - -0.2 67,434 - +1.3 67,490 - H281DRAFT_06285 0.12 +1.1 67,490 - H281DRAFT_06285 0.12 +2.6 68,201 - H281DRAFT_06286 0.21 -2.1 68,247 + H281DRAFT_06286 0.30 -3.3 68,247 + H281DRAFT_06286 0.30 -0.9 68,248 - H281DRAFT_06286 0.30 +0.1 68,248 - -0.9 68,572 - -0.9 68,572 - -1.1 68,653 + -0.9 68,654 - +0.9 68,773 + H281DRAFT_06287 0.19 -0.4 68,774 - H281DRAFT_06287 0.19 +1.7 68,854 + H281DRAFT_06287 0.31 -0.0 68,893 + H281DRAFT_06287 0.37 -1.3 68,917 + H281DRAFT_06287 0.41 -1.4 68,917 + H281DRAFT_06287 0.41 -0.7 68,917 + H281DRAFT_06287 0.41 -0.6 68,917 + H281DRAFT_06287 0.41 -1.6 68,918 - H281DRAFT_06287 0.41 +0.7 68,918 - H281DRAFT_06287 0.41 +0.7 68,918 - H281DRAFT_06287 0.41 +1.5 68,918 - H281DRAFT_06287 0.41 -0.6 68,918 - H281DRAFT_06287 0.41 +1.0 68,918 - H281DRAFT_06287 0.41 -0.1 68,918 - +0.1 68,925 + H281DRAFT_06287 0.42 -2.5 68,926 - H281DRAFT_06287 0.42 +2.7 69,010 + H281DRAFT_06287 0.55 -2.4 69,018 - H281DRAFT_06287 0.56 -0.4 69,109 + H281DRAFT_06287 0.70 -0.2 69,214 + H281DRAFT_06287 0.86 -2.6 69,316 + +0.3 69,317 - -0.7 69,317 - +0.3 69,317 - +2.0 69,317 - +0.1 69,319 + -0.1 69,319 + -1.4 69,319 + +1.5 69,320 - +1.2 69,320 - -0.6 69,538 - -1.4 69,580 + -0.3 69,580 + -0.5 69,580 + +0.2 69,580 + +0.1 69,580 + -0.9 69,580 + +0.2 69,581 - -0.0 69,581 - -0.9 69,581 - +1.7 69,581 - +0.7 69,581 - +0.2 69,586 + -0.5 69,587 - -2.1
Or see this region's nucleotide sequence