Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06101 and H281DRAFT_06102 are separated by 58 nucleotides H281DRAFT_06102 and H281DRAFT_06103 are separated by 1 nucleotides H281DRAFT_06103 and H281DRAFT_06104 overlap by 4 nucleotides H281DRAFT_06104 and H281DRAFT_06105 are separated by 37 nucleotides
H281DRAFT_06101: H281DRAFT_06101 - peptide/nickel transport system permease protein, at 121,245 to 122,315
_06101
H281DRAFT_06102: H281DRAFT_06102 - peptide/nickel transport system permease protein, at 122,374 to 123,288
_06102
H281DRAFT_06103: H281DRAFT_06103 - peptide/nickel transport system ATP-binding protein, at 123,290 to 124,180
_06103
H281DRAFT_06104: H281DRAFT_06104 - peptide/nickel transport system ATP-binding protein, at 124,177 to 124,944
_06104
H281DRAFT_06105: H281DRAFT_06105 - transcriptional regulator, GntR family, at 124,982 to 126,085
_06105
Position (kb) 123
124
125 Strain fitness (log2 ratio) -2
-1
0
1 at 122.390 kb on + strand at 122.418 kb on + strand at 122.702 kb on + strand, within H281DRAFT_06102 at 122.741 kb on + strand, within H281DRAFT_06102 at 123.946 kb on + strand, within H281DRAFT_06103 at 123.998 kb on + strand, within H281DRAFT_06103 at 124.177 kb on - strand at 124.479 kb on - strand, within H281DRAFT_06104 at 124.483 kb on - strand, within H281DRAFT_06104 at 124.536 kb on - strand, within H281DRAFT_06104 at 124.536 kb on - strand, within H281DRAFT_06104 at 124.829 kb on + strand, within H281DRAFT_06104 at 124.905 kb on + strand at 124.983 kb on + strand at 125.001 kb on + strand at 125.005 kb on + strand at 125.005 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 122,390 + +0.8 122,418 + -1.9 122,702 + H281DRAFT_06102 0.36 +0.3 122,741 + H281DRAFT_06102 0.40 +1.1 123,946 + H281DRAFT_06103 0.74 +0.5 123,998 + H281DRAFT_06103 0.79 -0.2 124,177 - -0.4 124,479 - H281DRAFT_06104 0.39 +1.5 124,483 - H281DRAFT_06104 0.40 +0.3 124,536 - H281DRAFT_06104 0.47 +1.0 124,536 - H281DRAFT_06104 0.47 +0.6 124,829 + H281DRAFT_06104 0.85 +0.7 124,905 + -0.5 124,983 + -0.3 125,001 + -0.0 125,005 + -0.4 125,005 + -0.6
Or see this region's nucleotide sequence