Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06075

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06072 and H281DRAFT_06073 are separated by 86 nucleotidesH281DRAFT_06073 and H281DRAFT_06074 are separated by 86 nucleotidesH281DRAFT_06074 and H281DRAFT_06075 are separated by 5 nucleotidesH281DRAFT_06075 and H281DRAFT_06076 are separated by 406 nucleotides H281DRAFT_06072: H281DRAFT_06072 - 3-isopropylmalate dehydrogenase, at 88,495 to 89,562 _06072 H281DRAFT_06073: H281DRAFT_06073 - 3-isopropylmalate dehydratase, small subunit, at 89,649 to 90,302 _06073 H281DRAFT_06074: H281DRAFT_06074 - entericidin A, at 90,389 to 90,547 _06074 H281DRAFT_06075: H281DRAFT_06075 - 3-isopropylmalate dehydratase, large subunit, at 90,553 to 91,962 _06075 H281DRAFT_06076: H281DRAFT_06076 - diguanylate cyclase (GGDEF) domain-containing protein, at 92,369 to 94,075 _06076 Position (kb) 90 91 92Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 89.605 kb on + strandat 89.605 kb on + strandat 89.606 kb on - strandat 89.650 kb on + strandat 89.704 kb on + strandat 89.770 kb on + strand, within H281DRAFT_06073at 89.771 kb on - strand, within H281DRAFT_06073at 89.875 kb on + strand, within H281DRAFT_06073at 89.876 kb on - strand, within H281DRAFT_06073at 89.954 kb on - strand, within H281DRAFT_06073at 90.296 kb on + strandat 90.297 kb on - strandat 90.497 kb on - strand, within H281DRAFT_06074at 90.497 kb on - strand, within H281DRAFT_06074at 90.497 kb on - strand, within H281DRAFT_06074at 90.768 kb on + strand, within H281DRAFT_06075at 90.885 kb on - strand, within H281DRAFT_06075at 90.885 kb on - strand, within H281DRAFT_06075at 90.885 kb on - strand, within H281DRAFT_06075at 90.885 kb on - strand, within H281DRAFT_06075at 90.885 kb on - strand, within H281DRAFT_06075at 90.885 kb on - strand, within H281DRAFT_06075at 90.921 kb on + strandat 90.989 kb on + strand, within H281DRAFT_06075at 90.990 kb on - strand, within H281DRAFT_06075at 90.990 kb on - strand, within H281DRAFT_06075at 91.612 kb on - strand, within H281DRAFT_06075at 91.773 kb on + strand, within H281DRAFT_06075at 91.774 kb on - strand, within H281DRAFT_06075at 91.886 kb on + strandat 91.886 kb on + strandat 91.886 kb on + strandat 91.887 kb on - strandat 91.887 kb on - strandat 91.946 kb on + strandat 91.975 kb on - strandat 91.975 kb on - strandat 91.978 kb on - strandat 92.089 kb on + strandat 92.300 kb on + strandat 92.300 kb on + strandat 92.355 kb on + strandat 92.355 kb on + strandat 92.507 kb on + strandat 92.518 kb on + strandat 92.519 kb on - strandat 92.519 kb on - strandat 92.519 kb on - strandat 92.609 kb on + strand, within H281DRAFT_06076at 92.618 kb on + strand, within H281DRAFT_06076at 92.619 kb on - strand, within H281DRAFT_06076at 92.664 kb on - strand, within H281DRAFT_06076at 92.666 kb on + strand, within H281DRAFT_06076at 92.667 kb on - strand, within H281DRAFT_06076

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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89,605 + -2.4
89,605 + -0.8
89,606 - -0.0
89,650 + -2.5
89,704 + -5.6
89,770 + H281DRAFT_06073 0.19 -4.0
89,771 - H281DRAFT_06073 0.19 -2.7
89,875 + H281DRAFT_06073 0.35 -1.8
89,876 - H281DRAFT_06073 0.35 -1.9
89,954 - H281DRAFT_06073 0.47 -2.4
90,296 + -2.4
90,297 - -0.9
90,497 - H281DRAFT_06074 0.68 +0.6
90,497 - H281DRAFT_06074 0.68 +1.5
90,497 - H281DRAFT_06074 0.68 +0.5
90,768 + H281DRAFT_06075 0.15 -2.4
90,885 - H281DRAFT_06075 0.24 -2.1
90,885 - H281DRAFT_06075 0.24 -2.3
90,885 - H281DRAFT_06075 0.24 -3.0
90,885 - H281DRAFT_06075 0.24 -3.1
90,885 - H281DRAFT_06075 0.24 -3.5
90,885 - H281DRAFT_06075 0.24 -0.5
90,921 + -0.5
90,989 + H281DRAFT_06075 0.31 -3.0
90,990 - H281DRAFT_06075 0.31 -3.8
90,990 - H281DRAFT_06075 0.31 -1.6
91,612 - H281DRAFT_06075 0.75 -2.2
91,773 + H281DRAFT_06075 0.87 -2.9
91,774 - H281DRAFT_06075 0.87 -1.6
91,886 + -2.1
91,886 + -2.6
91,886 + -2.6
91,887 - -1.3
91,887 - -1.7
91,946 + -1.8
91,975 - +0.7
91,975 - -0.1
91,978 - +0.6
92,089 + -0.2
92,300 + +0.7
92,300 + -0.3
92,355 + +1.4
92,355 + -0.1
92,507 + -0.6
92,518 + +1.1
92,519 - +0.3
92,519 - +0.8
92,519 - +0.5
92,609 + H281DRAFT_06076 0.14 +1.0
92,618 + H281DRAFT_06076 0.15 -0.1
92,619 - H281DRAFT_06076 0.15 +1.4
92,664 - H281DRAFT_06076 0.17 -0.0
92,666 + H281DRAFT_06076 0.17 -0.1
92,667 - H281DRAFT_06076 0.17 -0.9

Or see this region's nucleotide sequence