Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06068

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06067 and H281DRAFT_06068 are separated by 52 nucleotidesH281DRAFT_06068 and H281DRAFT_06069 overlap by 11 nucleotidesH281DRAFT_06069 and H281DRAFT_06070 overlap by 4 nucleotides H281DRAFT_06067: H281DRAFT_06067 - tryptophan synthase, beta chain, at 81,733 to 82,926 _06067 H281DRAFT_06068: H281DRAFT_06068 - phosphoribosylanthranilate isomerase, at 82,979 to 83,704 _06068 H281DRAFT_06069: H281DRAFT_06069 - tRNA pseudouridine38-40 synthase, at 83,694 to 84,512 _06069 H281DRAFT_06070: H281DRAFT_06070 - FimV C-terminal domain-containing protein, at 84,509 to 86,827 _06070 Position (kb) 82 83 84Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 82.002 kb on - strand, within H281DRAFT_06067at 82.064 kb on + strand, within H281DRAFT_06067at 82.064 kb on + strand, within H281DRAFT_06067at 82.065 kb on - strand, within H281DRAFT_06067at 82.065 kb on - strand, within H281DRAFT_06067at 82.068 kb on + strand, within H281DRAFT_06067at 82.068 kb on + strand, within H281DRAFT_06067at 82.068 kb on + strand, within H281DRAFT_06067at 82.069 kb on - strand, within H281DRAFT_06067at 82.069 kb on - strand, within H281DRAFT_06067at 82.207 kb on - strand, within H281DRAFT_06067at 82.360 kb on - strand, within H281DRAFT_06067at 82.361 kb on + strand, within H281DRAFT_06067at 82.361 kb on + strand, within H281DRAFT_06067at 82.361 kb on + strand, within H281DRAFT_06067at 82.361 kb on + strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.520 kb on + strand, within H281DRAFT_06067at 82.520 kb on + strand, within H281DRAFT_06067at 82.520 kb on + strand, within H281DRAFT_06067at 82.520 kb on + strand, within H281DRAFT_06067at 82.521 kb on - strand, within H281DRAFT_06067at 82.521 kb on - strand, within H281DRAFT_06067at 82.659 kb on + strand, within H281DRAFT_06067at 82.660 kb on - strand, within H281DRAFT_06067at 82.769 kb on + strand, within H281DRAFT_06067at 82.787 kb on + strand, within H281DRAFT_06067at 82.838 kb on - strandat 82.838 kb on - strandat 82.939 kb on + strandat 82.940 kb on - strandat 83.057 kb on + strandat 83.057 kb on + strand, within H281DRAFT_06068at 83.176 kb on + strand, within H281DRAFT_06068at 83.177 kb on - strand, within H281DRAFT_06068at 83.257 kb on - strand, within H281DRAFT_06068at 83.273 kb on + strand, within H281DRAFT_06068at 83.571 kb on - strand, within H281DRAFT_06068at 83.724 kb on + strandat 83.725 kb on - strandat 83.730 kb on - strandat 83.800 kb on + strand, within H281DRAFT_06069at 83.801 kb on - strand, within H281DRAFT_06069at 83.900 kb on - strandat 84.103 kb on - strand, within H281DRAFT_06069at 84.178 kb on + strand, within H281DRAFT_06069at 84.179 kb on - strand, within H281DRAFT_06069at 84.179 kb on - strand, within H281DRAFT_06069at 84.184 kb on + strand, within H281DRAFT_06069at 84.185 kb on - strandat 84.185 kb on - strand, within H281DRAFT_06069at 84.185 kb on - strand, within H281DRAFT_06069at 84.185 kb on - strand, within H281DRAFT_06069at 84.185 kb on - strand, within H281DRAFT_06069at 84.485 kb on - strandat 84.631 kb on - strandat 84.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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82,002 - H281DRAFT_06067 0.23 -2.8
82,064 + H281DRAFT_06067 0.28 -3.2
82,064 + H281DRAFT_06067 0.28 -3.2
82,065 - H281DRAFT_06067 0.28 -1.9
82,065 - H281DRAFT_06067 0.28 -2.3
82,068 + H281DRAFT_06067 0.28 -3.0
82,068 + H281DRAFT_06067 0.28 -1.8
82,068 + H281DRAFT_06067 0.28 -5.1
82,069 - H281DRAFT_06067 0.28 -1.3
82,069 - H281DRAFT_06067 0.28 -1.7
82,207 - H281DRAFT_06067 0.40 -4.1
82,360 - H281DRAFT_06067 0.53 -5.5
82,361 + H281DRAFT_06067 0.53 -1.3
82,361 + H281DRAFT_06067 0.53 -3.2
82,361 + H281DRAFT_06067 0.53 -4.3
82,361 + H281DRAFT_06067 0.53 -0.1
82,362 - H281DRAFT_06067 0.53 -4.0
82,362 - H281DRAFT_06067 0.53 -2.2
82,362 - H281DRAFT_06067 0.53 -3.4
82,362 - H281DRAFT_06067 0.53 -3.6
82,362 - H281DRAFT_06067 0.53 -3.9
82,362 - H281DRAFT_06067 0.53 -4.2
82,362 - H281DRAFT_06067 0.53 -3.6
82,520 + H281DRAFT_06067 0.66 -4.3
82,520 + H281DRAFT_06067 0.66 -3.6
82,520 + H281DRAFT_06067 0.66 -4.3
82,520 + H281DRAFT_06067 0.66 -3.3
82,521 - H281DRAFT_06067 0.66 -4.4
82,521 - H281DRAFT_06067 0.66 -4.5
82,659 + H281DRAFT_06067 0.78 -3.3
82,660 - H281DRAFT_06067 0.78 -1.9
82,769 + H281DRAFT_06067 0.87 -4.3
82,787 + H281DRAFT_06067 0.88 -3.6
82,838 - -4.4
82,838 - -3.6
82,939 + -0.3
82,940 - -0.5
83,057 + +1.5
83,057 + H281DRAFT_06068 0.11 -1.8
83,176 + H281DRAFT_06068 0.27 -0.7
83,177 - H281DRAFT_06068 0.27 -2.9
83,257 - H281DRAFT_06068 0.38 -4.1
83,273 + H281DRAFT_06068 0.40 -3.9
83,571 - H281DRAFT_06068 0.82 -5.0
83,724 + -0.7
83,725 - -0.7
83,730 - +0.1
83,800 + H281DRAFT_06069 0.13 -1.3
83,801 - H281DRAFT_06069 0.13 -0.5
83,900 - -1.1
84,103 - H281DRAFT_06069 0.50 -0.1
84,178 + H281DRAFT_06069 0.59 -0.1
84,179 - H281DRAFT_06069 0.59 +0.4
84,179 - H281DRAFT_06069 0.59 +0.5
84,184 + H281DRAFT_06069 0.60 +0.5
84,185 - +1.5
84,185 - H281DRAFT_06069 0.60 +0.4
84,185 - H281DRAFT_06069 0.60 +0.4
84,185 - H281DRAFT_06069 0.60 +2.1
84,185 - H281DRAFT_06069 0.60 +0.2
84,485 - -2.1
84,631 - +0.0
84,631 - +0.8

Or see this region's nucleotide sequence