Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06060

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06059 and H281DRAFT_06060 are separated by 323 nucleotidesH281DRAFT_06060 and H281DRAFT_06061 are separated by 144 nucleotidesH281DRAFT_06061 and H281DRAFT_06062 are separated by 7 nucleotides H281DRAFT_06059: H281DRAFT_06059 - O-succinylhomoserine sulfhydrylase, at 72,799 to 73,989 _06059 H281DRAFT_06060: H281DRAFT_06060 - amidophosphoribosyltransferase, at 74,313 to 75,863 _06060 H281DRAFT_06061: H281DRAFT_06061 - membrane protein required for colicin V production, at 76,008 to 76,502 _06061 H281DRAFT_06062: H281DRAFT_06062 - DedD protein, at 76,510 to 77,469 _06062 Position (kb) 74 75 76Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 73.611 kb on + strand, within H281DRAFT_06059at 73.827 kb on - strand, within H281DRAFT_06059at 73.832 kb on + strand, within H281DRAFT_06059at 73.832 kb on + strand, within H281DRAFT_06059at 73.832 kb on + strand, within H281DRAFT_06059at 73.832 kb on + strandat 73.832 kb on + strand, within H281DRAFT_06059at 73.832 kb on + strand, within H281DRAFT_06059at 73.833 kb on - strand, within H281DRAFT_06059at 73.835 kb on + strand, within H281DRAFT_06059at 73.835 kb on + strand, within H281DRAFT_06059at 73.835 kb on + strand, within H281DRAFT_06059at 73.836 kb on - strand, within H281DRAFT_06059at 73.836 kb on - strand, within H281DRAFT_06059at 73.906 kb on + strandat 73.907 kb on - strandat 74.036 kb on + strandat 74.040 kb on - strandat 74.049 kb on + strandat 74.049 kb on + strandat 74.049 kb on + strandat 74.050 kb on - strandat 74.050 kb on - strandat 74.134 kb on + strandat 74.135 kb on - strandat 74.191 kb on + strandat 74.192 kb on - strandat 74.252 kb on + strandat 74.252 kb on + strandat 74.441 kb on - strandat 74.467 kb on + strandat 74.468 kb on - strand, within H281DRAFT_06060at 74.554 kb on + strand, within H281DRAFT_06060at 74.554 kb on + strand, within H281DRAFT_06060at 74.647 kb on + strand, within H281DRAFT_06060at 74.648 kb on - strand, within H281DRAFT_06060at 74.876 kb on - strand, within H281DRAFT_06060at 75.020 kb on - strand, within H281DRAFT_06060at 75.595 kb on + strand, within H281DRAFT_06060at 75.595 kb on + strand, within H281DRAFT_06060at 75.596 kb on - strand, within H281DRAFT_06060at 75.811 kb on + strandat 75.812 kb on - strandat 75.843 kb on + strandat 75.844 kb on - strandat 75.844 kb on - strandat 75.881 kb on + strandat 75.923 kb on + strandat 75.950 kb on + strandat 75.950 kb on + strandat 75.950 kb on + strandat 75.950 kb on + strandat 75.951 kb on - strandat 75.951 kb on - strandat 75.951 kb on - strandat 76.021 kb on + strandat 76.021 kb on + strandat 76.056 kb on + strandat 76.056 kb on + strandat 76.056 kb on + strandat 76.057 kb on - strandat 76.057 kb on - strandat 76.079 kb on - strand, within H281DRAFT_06061at 76.347 kb on - strand, within H281DRAFT_06061at 76.347 kb on - strand, within H281DRAFT_06061at 76.347 kb on - strandat 76.348 kb on + strand, within H281DRAFT_06061at 76.348 kb on + strand, within H281DRAFT_06061at 76.348 kb on + strandat 76.349 kb on - strand, within H281DRAFT_06061at 76.349 kb on - strand, within H281DRAFT_06061at 76.477 kb on - strandat 76.477 kb on - strandat 76.483 kb on + strandat 76.483 kb on + strandat 76.484 kb on - strandat 76.484 kb on - strandat 76.511 kb on + strandat 76.511 kb on + strandat 76.656 kb on + strand, within H281DRAFT_06062at 76.656 kb on + strand, within H281DRAFT_06062at 76.657 kb on - strand, within H281DRAFT_06062at 76.659 kb on - strand, within H281DRAFT_06062at 76.659 kb on - strand, within H281DRAFT_06062at 76.659 kb on - strand, within H281DRAFT_06062

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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73,611 + H281DRAFT_06059 0.68 -3.7
73,827 - H281DRAFT_06059 0.86 -2.9
73,832 + H281DRAFT_06059 0.87 -3.2
73,832 + H281DRAFT_06059 0.87 -2.8
73,832 + H281DRAFT_06059 0.87 -2.3
73,832 + -1.1
73,832 + H281DRAFT_06059 0.87 -3.5
73,832 + H281DRAFT_06059 0.87 -2.2
73,833 - H281DRAFT_06059 0.87 -5.0
73,835 + H281DRAFT_06059 0.87 -4.4
73,835 + H281DRAFT_06059 0.87 -4.1
73,835 + H281DRAFT_06059 0.87 -4.2
73,836 - H281DRAFT_06059 0.87 -1.3
73,836 - H281DRAFT_06059 0.87 -0.8
73,906 + -2.2
73,907 - -2.4
74,036 + -2.1
74,040 - -0.7
74,049 + -2.2
74,049 + -0.8
74,049 + -4.1
74,050 - +0.3
74,050 - -0.5
74,134 + -3.1
74,135 - +0.8
74,191 + -1.8
74,192 - +0.5
74,252 + -1.2
74,252 + +0.5
74,441 - -4.1
74,467 + -0.5
74,468 - H281DRAFT_06060 0.10 -1.3
74,554 + H281DRAFT_06060 0.16 +0.5
74,554 + H281DRAFT_06060 0.16 -2.6
74,647 + H281DRAFT_06060 0.22 -0.1
74,648 - H281DRAFT_06060 0.22 -0.1
74,876 - H281DRAFT_06060 0.36 -2.6
75,020 - H281DRAFT_06060 0.46 -0.5
75,595 + H281DRAFT_06060 0.83 -1.6
75,595 + H281DRAFT_06060 0.83 -2.1
75,596 - H281DRAFT_06060 0.83 -1.3
75,811 + +0.5
75,812 - -0.6
75,843 + -0.1
75,844 - -0.5
75,844 - -1.8
75,881 + -3.3
75,923 + -0.5
75,950 + +1.5
75,950 + -1.5
75,950 + -2.3
75,950 + -2.6
75,951 - +0.8
75,951 - +0.3
75,951 - +0.1
76,021 + -1.5
76,021 + -0.8
76,056 + -3.4
76,056 + -2.1
76,056 + -1.3
76,057 - +0.3
76,057 - -0.9
76,079 - H281DRAFT_06061 0.14 +0.1
76,347 - H281DRAFT_06061 0.68 -0.1
76,347 - H281DRAFT_06061 0.68 -1.1
76,347 - +0.1
76,348 + H281DRAFT_06061 0.69 -1.1
76,348 + H281DRAFT_06061 0.69 -2.5
76,348 + -0.1
76,349 - H281DRAFT_06061 0.69 +1.7
76,349 - H281DRAFT_06061 0.69 -0.3
76,477 - -0.3
76,477 - -0.2
76,483 + -0.6
76,483 + -2.3
76,484 - -0.1
76,484 - -1.1
76,511 + -0.1
76,511 + -0.8
76,656 + H281DRAFT_06062 0.15 -1.8
76,656 + H281DRAFT_06062 0.15 -0.1
76,657 - H281DRAFT_06062 0.15 -0.4
76,659 - H281DRAFT_06062 0.16 -0.4
76,659 - H281DRAFT_06062 0.16 -0.5
76,659 - H281DRAFT_06062 0.16 +0.8

Or see this region's nucleotide sequence