Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05852 and H281DRAFT_05853 are separated by 9 nucleotides H281DRAFT_05853 and H281DRAFT_05854 are separated by 141 nucleotides H281DRAFT_05854 and H281DRAFT_05855 are separated by 1 nucleotides H281DRAFT_05855 and H281DRAFT_05856 are separated by 16 nucleotides
H281DRAFT_05852: H281DRAFT_05852 - transcriptional regulator, TetR family, at 132,403 to 133,014
_05852
H281DRAFT_05853: H281DRAFT_05853 - Protein of unknown function, at 133,024 to 133,839
_05853
H281DRAFT_05854: H281DRAFT_05854 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE, at 133,981 to 135,069
_05854
H281DRAFT_05855: H281DRAFT_05855 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD, at 135,071 to 135,622
_05855
H281DRAFT_05856: H281DRAFT_05856 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC, at 135,639 to 136,442
_05856
Position (kb) 133
134
135
136 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 133.026 kb on - strand at 133.521 kb on - strand at 133.521 kb on - strand, within H281DRAFT_05853 at 133.523 kb on + strand, within H281DRAFT_05853 at 133.524 kb on - strand, within H281DRAFT_05853 at 133.524 kb on - strand, within H281DRAFT_05853 at 133.524 kb on - strand, within H281DRAFT_05853 at 133.524 kb on - strand, within H281DRAFT_05853 at 133.610 kb on - strand, within H281DRAFT_05853 at 133.610 kb on - strand, within H281DRAFT_05853 at 133.923 kb on + strand at 133.923 kb on + strand at 133.928 kb on + strand at 133.928 kb on + strand at 133.929 kb on - strand at 133.929 kb on - strand at 133.995 kb on - strand at 134.002 kb on + strand at 134.003 kb on - strand at 134.079 kb on - strand at 134.079 kb on - strand at 134.528 kb on + strand, within H281DRAFT_05854 at 134.708 kb on + strand, within H281DRAFT_05854 at 134.708 kb on + strand, within H281DRAFT_05854 at 134.709 kb on - strand, within H281DRAFT_05854 at 134.895 kb on - strand, within H281DRAFT_05854 at 135.070 kb on - strand at 135.075 kb on + strand at 135.087 kb on + strand at 135.088 kb on - strand at 135.120 kb on + strand at 135.240 kb on - strand, within H281DRAFT_05855 at 135.372 kb on + strand, within H281DRAFT_05855 at 135.447 kb on + strand, within H281DRAFT_05855 at 135.447 kb on + strand, within H281DRAFT_05855 at 135.607 kb on + strand at 135.638 kb on - strand at 135.840 kb on + strand, within H281DRAFT_05856 at 135.841 kb on - strand, within H281DRAFT_05856 at 135.893 kb on - strand, within H281DRAFT_05856 at 135.905 kb on - strand, within H281DRAFT_05856 at 135.905 kb on - strand, within H281DRAFT_05856 at 135.905 kb on - strand, within H281DRAFT_05856 at 135.991 kb on + strand, within H281DRAFT_05856
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 133,026 - -0.1 133,521 - +0.9 133,521 - H281DRAFT_05853 0.61 +0.4 133,523 + H281DRAFT_05853 0.61 +0.3 133,524 - H281DRAFT_05853 0.61 -0.3 133,524 - H281DRAFT_05853 0.61 -0.7 133,524 - H281DRAFT_05853 0.61 +0.8 133,524 - H281DRAFT_05853 0.61 -0.1 133,610 - H281DRAFT_05853 0.72 +1.9 133,610 - H281DRAFT_05853 0.72 +0.9 133,923 + +0.1 133,923 + -2.3 133,928 + -0.3 133,928 + +0.1 133,929 - +0.1 133,929 - +1.3 133,995 - +0.1 134,002 + -0.5 134,003 - -0.8 134,079 - -2.0 134,079 - -0.9 134,528 + H281DRAFT_05854 0.50 -1.7 134,708 + H281DRAFT_05854 0.67 -1.0 134,708 + H281DRAFT_05854 0.67 -0.6 134,709 - H281DRAFT_05854 0.67 -1.1 134,895 - H281DRAFT_05854 0.84 -1.3 135,070 - +1.9 135,075 + -0.7 135,087 + +0.9 135,088 - +1.5 135,120 + -0.8 135,240 - H281DRAFT_05855 0.31 +0.7 135,372 + H281DRAFT_05855 0.55 -1.6 135,447 + H281DRAFT_05855 0.68 -1.8 135,447 + H281DRAFT_05855 0.68 -2.6 135,607 + +3.0 135,638 - -0.8 135,840 + H281DRAFT_05856 0.25 -0.5 135,841 - H281DRAFT_05856 0.25 -1.2 135,893 - H281DRAFT_05856 0.32 -2.6 135,905 - H281DRAFT_05856 0.33 -0.6 135,905 - H281DRAFT_05856 0.33 -2.2 135,905 - H281DRAFT_05856 0.33 -0.2 135,991 + H281DRAFT_05856 0.44 -1.3
Or see this region's nucleotide sequence