Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05799 and H281DRAFT_05800 are separated by 147 nucleotides H281DRAFT_05800 and H281DRAFT_05801 are separated by 11 nucleotides H281DRAFT_05801 and H281DRAFT_05802 are separated by 317 nucleotides
H281DRAFT_05799: H281DRAFT_05799 - adenosylhomocysteinase, at 74,252 to 75,673
_05799
H281DRAFT_05800: H281DRAFT_05800 - putative membrane protein, at 75,821 to 76,174
_05800
H281DRAFT_05801: H281DRAFT_05801 - 5,10-methylenetetrahydrofolate reductase (NAD(P)), at 76,186 to 77,016
_05801
H281DRAFT_05802: H281DRAFT_05802 - dipeptide transport system substrate-binding protein, at 77,334 to 78,962
_05802
Position (kb) 76
77
78 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 75.671 kb on + strand at 75.671 kb on + strand at 75.671 kb on + strand at 75.671 kb on + strand at 75.671 kb on + strand at 75.675 kb on + strand at 75.676 kb on - strand at 75.818 kb on + strand at 75.818 kb on + strand at 75.818 kb on + strand at 75.818 kb on + strand at 75.818 kb on + strand at 75.818 kb on + strand at 75.818 kb on + strand at 75.819 kb on - strand at 75.819 kb on - strand at 75.819 kb on - strand at 75.819 kb on - strand at 75.819 kb on - strand at 75.875 kb on + strand, within H281DRAFT_05800 at 75.875 kb on + strand, within H281DRAFT_05800 at 75.876 kb on - strand, within H281DRAFT_05800 at 75.876 kb on - strand, within H281DRAFT_05800 at 75.876 kb on - strand, within H281DRAFT_05800 at 75.930 kb on + strand, within H281DRAFT_05800 at 76.117 kb on + strand, within H281DRAFT_05800 at 76.117 kb on + strand, within H281DRAFT_05800 at 76.117 kb on + strand, within H281DRAFT_05800 at 76.117 kb on + strand, within H281DRAFT_05800 at 76.177 kb on + strand at 76.177 kb on + strand at 76.177 kb on + strand at 76.178 kb on - strand at 76.178 kb on - strand at 76.278 kb on - strand, within H281DRAFT_05801 at 76.465 kb on - strand, within H281DRAFT_05801 at 76.546 kb on - strand, within H281DRAFT_05801 at 76.600 kb on + strand, within H281DRAFT_05801 at 76.600 kb on + strand, within H281DRAFT_05801 at 76.600 kb on + strand, within H281DRAFT_05801 at 76.687 kb on + strand, within H281DRAFT_05801 at 76.708 kb on + strand, within H281DRAFT_05801 at 76.961 kb on - strand at 77.014 kb on + strand at 77.015 kb on - strand at 77.141 kb on + strand at 77.141 kb on + strand at 77.141 kb on + strand at 77.142 kb on - strand at 77.287 kb on - strand at 77.287 kb on - strand at 77.287 kb on - strand at 77.287 kb on - strand at 77.298 kb on - strand at 77.493 kb on + strand at 77.493 kb on + strand at 77.493 kb on + strand at 77.493 kb on + strand at 77.494 kb on - strand at 77.523 kb on - strand, within H281DRAFT_05802 at 77.535 kb on + strand, within H281DRAFT_05802 at 77.535 kb on + strand, within H281DRAFT_05802 at 77.535 kb on + strand, within H281DRAFT_05802 at 77.625 kb on + strand, within H281DRAFT_05802 at 77.625 kb on + strand, within H281DRAFT_05802 at 77.625 kb on + strand, within H281DRAFT_05802 at 77.625 kb on + strand, within H281DRAFT_05802 at 77.625 kb on + strand, within H281DRAFT_05802 at 77.626 kb on - strand, within H281DRAFT_05802 at 77.778 kb on + strand, within H281DRAFT_05802 at 77.836 kb on - strand, within H281DRAFT_05802 at 77.898 kb on + strand, within H281DRAFT_05802 at 77.922 kb on + strand, within H281DRAFT_05802 at 78.006 kb on + strand, within H281DRAFT_05802 at 78.006 kb on + strand, within H281DRAFT_05802 at 78.008 kb on + strand, within H281DRAFT_05802
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 75,671 + +1.5 75,671 + +0.5 75,671 + +0.1 75,671 + -0.2 75,671 + -0.3 75,675 + -0.1 75,676 - -4.3 75,818 + -0.4 75,818 + -1.3 75,818 + -0.3 75,818 + -0.4 75,818 + -0.4 75,818 + -0.1 75,818 + +0.1 75,819 - -3.7 75,819 - +0.5 75,819 - -4.2 75,819 - -4.0 75,819 - -1.9 75,875 + H281DRAFT_05800 0.15 +0.0 75,875 + H281DRAFT_05800 0.15 -0.8 75,876 - H281DRAFT_05800 0.16 -0.2 75,876 - H281DRAFT_05800 0.16 -3.0 75,876 - H281DRAFT_05800 0.16 -4.6 75,930 + H281DRAFT_05800 0.31 +2.0 76,117 + H281DRAFT_05800 0.84 -0.3 76,117 + H281DRAFT_05800 0.84 +0.5 76,117 + H281DRAFT_05800 0.84 -1.1 76,117 + H281DRAFT_05800 0.84 -1.0 76,177 + +1.1 76,177 + -0.2 76,177 + +0.2 76,178 - -1.1 76,178 - +1.5 76,278 - H281DRAFT_05801 0.11 -0.9 76,465 - H281DRAFT_05801 0.34 -2.9 76,546 - H281DRAFT_05801 0.43 -3.4 76,600 + H281DRAFT_05801 0.50 -3.0 76,600 + H281DRAFT_05801 0.50 -3.0 76,600 + H281DRAFT_05801 0.50 -3.2 76,687 + H281DRAFT_05801 0.60 -2.4 76,708 + H281DRAFT_05801 0.63 -2.9 76,961 - -3.5 77,014 + +1.8 77,015 - +0.4 77,141 + +1.4 77,141 + +0.7 77,141 + +0.7 77,142 - -1.2 77,287 - -0.3 77,287 - +1.2 77,287 - -0.3 77,287 - -0.9 77,298 - +0.2 77,493 + -0.7 77,493 + +2.1 77,493 + -1.2 77,493 + +1.5 77,494 - +0.5 77,523 - H281DRAFT_05802 0.12 -0.9 77,535 + H281DRAFT_05802 0.12 +1.5 77,535 + H281DRAFT_05802 0.12 +0.9 77,535 + H281DRAFT_05802 0.12 -1.1 77,625 + H281DRAFT_05802 0.18 +1.7 77,625 + H281DRAFT_05802 0.18 -0.3 77,625 + H281DRAFT_05802 0.18 +0.6 77,625 + H281DRAFT_05802 0.18 +0.8 77,625 + H281DRAFT_05802 0.18 +1.0 77,626 - H281DRAFT_05802 0.18 +0.6 77,778 + H281DRAFT_05802 0.27 -1.0 77,836 - H281DRAFT_05802 0.31 -0.5 77,898 + H281DRAFT_05802 0.35 +1.5 77,922 + H281DRAFT_05802 0.36 +0.0 78,006 + H281DRAFT_05802 0.41 +1.8 78,006 + H281DRAFT_05802 0.41 -0.9 78,008 + H281DRAFT_05802 0.41 -0.5
Or see this region's nucleotide sequence