Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05747 and H281DRAFT_05748 are separated by 59 nucleotides H281DRAFT_05748 and H281DRAFT_05749 are separated by 1 nucleotides H281DRAFT_05749 and H281DRAFT_05750 are separated by 261 nucleotides
H281DRAFT_05747: H281DRAFT_05747 - two-component system, chemotaxis family, response regulator CheB, at 20,482 to 21,570
_05747
H281DRAFT_05748: H281DRAFT_05748 - response regulator receiver protein, at 21,630 to 22,025
_05748
H281DRAFT_05749: H281DRAFT_05749 - chemotaxis protein CheZ, at 22,027 to 22,737
_05749
H281DRAFT_05750: H281DRAFT_05750 - Protein of unknown function (DUF2844), at 22,999 to 23,535
_05750
Position (kb) 21
22
23 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 21.084 kb on + strand, within H281DRAFT_05747 at 21.084 kb on + strand, within H281DRAFT_05747 at 21.084 kb on + strand, within H281DRAFT_05747 at 21.085 kb on - strand, within H281DRAFT_05747 at 21.085 kb on - strand, within H281DRAFT_05747 at 21.085 kb on - strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.241 kb on + strand, within H281DRAFT_05747 at 21.412 kb on + strand, within H281DRAFT_05747 at 21.412 kb on + strand, within H281DRAFT_05747 at 21.412 kb on + strand, within H281DRAFT_05747 at 21.412 kb on + strand at 21.413 kb on - strand, within H281DRAFT_05747 at 21.413 kb on - strand, within H281DRAFT_05747 at 21.413 kb on - strand, within H281DRAFT_05747 at 21.510 kb on + strand at 21.511 kb on - strand at 21.566 kb on + strand at 21.618 kb on - strand at 21.778 kb on - strand, within H281DRAFT_05748 at 21.778 kb on - strand, within H281DRAFT_05748 at 21.778 kb on - strand, within H281DRAFT_05748 at 21.942 kb on + strand, within H281DRAFT_05748 at 22.125 kb on + strand, within H281DRAFT_05749 at 22.125 kb on + strand, within H281DRAFT_05749 at 22.125 kb on + strand, within H281DRAFT_05749 at 22.125 kb on + strand, within H281DRAFT_05749 at 22.125 kb on + strand, within H281DRAFT_05749 at 22.126 kb on - strand, within H281DRAFT_05749 at 22.126 kb on - strand, within H281DRAFT_05749 at 22.216 kb on + strand, within H281DRAFT_05749 at 22.217 kb on - strand, within H281DRAFT_05749 at 22.217 kb on - strand, within H281DRAFT_05749 at 22.386 kb on + strand, within H281DRAFT_05749 at 22.778 kb on + strand at 22.811 kb on + strand at 22.832 kb on + strand at 22.832 kb on + strand at 22.833 kb on - strand at 22.833 kb on - strand at 22.833 kb on - strand at 22.833 kb on - strand at 22.835 kb on + strand at 22.835 kb on + strand at 22.835 kb on + strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.898 kb on + strand at 22.931 kb on - strand at 22.941 kb on + strand at 22.941 kb on + strand at 23.012 kb on + strand at 23.012 kb on + strand at 23.013 kb on - strand at 23.013 kb on - strand at 23.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 21,084 + H281DRAFT_05747 0.55 -2.0 21,084 + H281DRAFT_05747 0.55 -4.0 21,084 + H281DRAFT_05747 0.55 -3.0 21,085 - H281DRAFT_05747 0.55 -2.0 21,085 - H281DRAFT_05747 0.55 -1.1 21,085 - H281DRAFT_05747 0.55 -2.8 21,190 + H281DRAFT_05747 0.65 -3.3 21,190 + H281DRAFT_05747 0.65 -2.5 21,190 + H281DRAFT_05747 0.65 -2.2 21,190 + H281DRAFT_05747 0.65 -3.3 21,190 + H281DRAFT_05747 0.65 -3.9 21,190 + H281DRAFT_05747 0.65 -3.1 21,190 + H281DRAFT_05747 0.65 -0.5 21,190 + H281DRAFT_05747 0.65 -2.5 21,190 + H281DRAFT_05747 0.65 -4.1 21,190 + H281DRAFT_05747 0.65 -1.6 21,191 - H281DRAFT_05747 0.65 -2.3 21,191 - H281DRAFT_05747 0.65 -0.5 21,191 - H281DRAFT_05747 0.65 -2.5 21,191 - H281DRAFT_05747 0.65 -0.1 21,191 - H281DRAFT_05747 0.65 -3.1 21,191 - H281DRAFT_05747 0.65 -3.1 21,191 - H281DRAFT_05747 0.65 -3.7 21,191 - H281DRAFT_05747 0.65 -1.6 21,241 + H281DRAFT_05747 0.70 -3.4 21,412 + H281DRAFT_05747 0.85 -3.7 21,412 + H281DRAFT_05747 0.85 -1.3 21,412 + H281DRAFT_05747 0.85 -2.9 21,412 + +0.5 21,413 - H281DRAFT_05747 0.85 -0.9 21,413 - H281DRAFT_05747 0.85 -1.7 21,413 - H281DRAFT_05747 0.85 -2.2 21,510 + -3.4 21,511 - -0.5 21,566 + -0.0 21,618 - -1.0 21,778 - H281DRAFT_05748 0.37 -1.9 21,778 - H281DRAFT_05748 0.37 -2.5 21,778 - H281DRAFT_05748 0.37 -2.0 21,942 + H281DRAFT_05748 0.79 +1.7 22,125 + H281DRAFT_05749 0.14 -1.1 22,125 + H281DRAFT_05749 0.14 +2.4 22,125 + H281DRAFT_05749 0.14 +0.9 22,125 + H281DRAFT_05749 0.14 -0.8 22,125 + H281DRAFT_05749 0.14 -0.1 22,126 - H281DRAFT_05749 0.14 -3.4 22,126 - H281DRAFT_05749 0.14 -1.9 22,216 + H281DRAFT_05749 0.27 -1.8 22,217 - H281DRAFT_05749 0.27 -2.2 22,217 - H281DRAFT_05749 0.27 -2.3 22,386 + H281DRAFT_05749 0.50 -0.8 22,778 + +1.0 22,811 + +0.3 22,832 + -1.2 22,832 + +0.4 22,833 - +0.2 22,833 - +0.0 22,833 - -0.3 22,833 - +0.8 22,835 + +0.4 22,835 + -1.3 22,835 + +0.7 22,836 - +0.7 22,836 - +0.3 22,836 - -1.1 22,836 - +0.5 22,836 - +0.7 22,836 - -0.5 22,898 + +0.7 22,931 - -1.4 22,941 + +0.5 22,941 + -1.5 23,012 + +0.8 23,012 + -0.7 23,013 - -0.3 23,013 - +1.7 23,013 - -0.1
Or see this region's nucleotide sequence