Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05715

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05713 and H281DRAFT_05714 are separated by 17 nucleotidesH281DRAFT_05714 and H281DRAFT_05715 are separated by 13 nucleotidesH281DRAFT_05715 and H281DRAFT_05716 are separated by 365 nucleotides H281DRAFT_05713: H281DRAFT_05713 - anthranilate phosphoribosyltransferase, at 131,967 to 132,998 _05713 H281DRAFT_05714: H281DRAFT_05714 - anthranilate synthase, component II, at 133,016 to 133,609 _05714 H281DRAFT_05715: H281DRAFT_05715 - anthranilate synthase, component I, at 133,623 to 135,116 _05715 H281DRAFT_05716: H281DRAFT_05716 - phosphoglycolate phosphatase, at 135,482 to 136,198 _05716 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 132.716 kb on + strand, within H281DRAFT_05713at 132.716 kb on + strand, within H281DRAFT_05713at 132.716 kb on + strand, within H281DRAFT_05713at 132.726 kb on - strand, within H281DRAFT_05713at 132.867 kb on - strand, within H281DRAFT_05713at 133.138 kb on + strand, within H281DRAFT_05714at 133.139 kb on - strand, within H281DRAFT_05714at 133.525 kb on - strand, within H281DRAFT_05714at 133.557 kb on + strandat 133.557 kb on + strandat 133.572 kb on + strandat 133.572 kb on + strandat 133.572 kb on + strandat 133.572 kb on + strandat 133.573 kb on - strandat 133.573 kb on - strandat 133.573 kb on - strandat 133.587 kb on + strandat 133.587 kb on + strandat 133.588 kb on - strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.754 kb on - strandat 133.754 kb on - strandat 133.826 kb on - strand, within H281DRAFT_05715at 133.952 kb on + strand, within H281DRAFT_05715at 134.213 kb on + strand, within H281DRAFT_05715at 134.213 kb on + strand, within H281DRAFT_05715at 134.290 kb on + strand, within H281DRAFT_05715at 134.290 kb on + strand, within H281DRAFT_05715at 134.293 kb on + strand, within H281DRAFT_05715at 134.293 kb on + strand, within H281DRAFT_05715at 134.294 kb on - strand, within H281DRAFT_05715at 134.294 kb on - strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strandat 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.302 kb on + strand, within H281DRAFT_05715at 134.302 kb on + strand, within H281DRAFT_05715at 134.302 kb on + strand, within H281DRAFT_05715at 134.303 kb on - strand, within H281DRAFT_05715at 134.303 kb on - strand, within H281DRAFT_05715at 134.335 kb on + strand, within H281DRAFT_05715at 134.416 kb on + strand, within H281DRAFT_05715at 134.416 kb on + strand, within H281DRAFT_05715at 134.417 kb on - strand, within H281DRAFT_05715at 134.446 kb on + strand, within H281DRAFT_05715at 134.446 kb on + strand, within H281DRAFT_05715at 134.447 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.566 kb on + strand, within H281DRAFT_05715at 134.567 kb on - strand, within H281DRAFT_05715at 134.593 kb on + strand, within H281DRAFT_05715at 134.594 kb on - strand, within H281DRAFT_05715at 134.605 kb on + strandat 134.620 kb on - strand, within H281DRAFT_05715at 134.620 kb on - strand, within H281DRAFT_05715at 134.696 kb on + strand, within H281DRAFT_05715at 134.697 kb on - strand, within H281DRAFT_05715at 134.719 kb on + strand, within H281DRAFT_05715at 134.720 kb on - strand, within H281DRAFT_05715at 134.720 kb on - strand, within H281DRAFT_05715at 134.720 kb on - strand, within H281DRAFT_05715at 134.743 kb on + strand, within H281DRAFT_05715at 134.744 kb on - strand, within H281DRAFT_05715at 134.869 kb on - strand, within H281DRAFT_05715at 135.016 kb on + strandat 135.017 kb on - strandat 135.068 kb on + strandat 135.068 kb on + strandat 135.129 kb on + strandat 135.129 kb on + strandat 135.129 kb on + strandat 135.129 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.134 kb on - strandat 135.134 kb on - strandat 135.134 kb on - strandat 135.268 kb on - strandat 135.268 kb on - strandat 135.278 kb on + strandat 135.279 kb on - strandat 135.279 kb on - strandat 135.345 kb on + strandat 135.378 kb on - strandat 135.436 kb on - strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.541 kb on + strandat 135.541 kb on + strandat 135.541 kb on + strandat 135.542 kb on - strandat 135.542 kb on - strandat 135.542 kb on - strandat 135.555 kb on - strand, within H281DRAFT_05716at 135.565 kb on + strand, within H281DRAFT_05716at 135.565 kb on + strand, within H281DRAFT_05716at 135.566 kb on - strand, within H281DRAFT_05716at 135.566 kb on - strand, within H281DRAFT_05716at 135.582 kb on + strand, within H281DRAFT_05716at 135.582 kb on + strand, within H281DRAFT_05716at 135.583 kb on - strand, within H281DRAFT_05716at 135.583 kb on - strand, within H281DRAFT_05716at 135.583 kb on - strand, within H281DRAFT_05716at 135.765 kb on + strand, within H281DRAFT_05716at 135.766 kb on - strand, within H281DRAFT_05716at 135.766 kb on - strand, within H281DRAFT_05716at 135.781 kb on - strand, within H281DRAFT_05716at 135.930 kb on + strand, within H281DRAFT_05716at 135.931 kb on - strand, within H281DRAFT_05716at 135.931 kb on - strand, within H281DRAFT_05716at 136.004 kb on + strand, within H281DRAFT_05716at 136.005 kb on - strand, within H281DRAFT_05716at 136.005 kb on - strand, within H281DRAFT_05716at 136.029 kb on + strand, within H281DRAFT_05716

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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132,716 + H281DRAFT_05713 0.73 -1.4
132,716 + H281DRAFT_05713 0.73 -3.0
132,716 + H281DRAFT_05713 0.73 -3.6
132,726 - H281DRAFT_05713 0.74 -0.4
132,867 - H281DRAFT_05713 0.87 -3.1
133,138 + H281DRAFT_05714 0.21 -2.3
133,139 - H281DRAFT_05714 0.21 -1.6
133,525 - H281DRAFT_05714 0.86 -4.4
133,557 + -2.1
133,557 + -2.3
133,572 + -2.8
133,572 + -2.9
133,572 + -4.3
133,572 + -4.2
133,573 - -4.2
133,573 - -2.0
133,573 - -4.6
133,587 + +1.6
133,587 + -2.8
133,588 - -4.9
133,753 + -4.3
133,753 + -3.1
133,753 + -2.1
133,753 + -3.7
133,753 + -2.1
133,754 - -1.2
133,754 - -2.2
133,826 - H281DRAFT_05715 0.14 +0.2
133,952 + H281DRAFT_05715 0.22 -3.6
134,213 + H281DRAFT_05715 0.39 -4.4
134,213 + H281DRAFT_05715 0.39 -1.8
134,290 + H281DRAFT_05715 0.45 -3.7
134,290 + H281DRAFT_05715 0.45 -1.8
134,293 + H281DRAFT_05715 0.45 -3.8
134,293 + H281DRAFT_05715 0.45 -3.8
134,294 - H281DRAFT_05715 0.45 -4.1
134,294 - H281DRAFT_05715 0.45 -2.9
134,296 + H281DRAFT_05715 0.45 -3.7
134,296 + H281DRAFT_05715 0.45 -1.8
134,296 + H281DRAFT_05715 0.45 -4.9
134,296 + H281DRAFT_05715 0.45 -2.9
134,296 + H281DRAFT_05715 0.45 -1.8
134,296 + -0.0
134,297 - H281DRAFT_05715 0.45 -2.6
134,297 - H281DRAFT_05715 0.45 -3.3
134,297 - H281DRAFT_05715 0.45 -2.3
134,297 - H281DRAFT_05715 0.45 -3.1
134,297 - H281DRAFT_05715 0.45 -4.2
134,297 - H281DRAFT_05715 0.45 -2.2
134,297 - H281DRAFT_05715 0.45 -2.8
134,297 - H281DRAFT_05715 0.45 -3.1
134,297 - H281DRAFT_05715 0.45 -3.7
134,302 + H281DRAFT_05715 0.45 -3.9
134,302 + H281DRAFT_05715 0.45 -3.5
134,302 + H281DRAFT_05715 0.45 -1.0
134,303 - H281DRAFT_05715 0.46 -2.0
134,303 - H281DRAFT_05715 0.46 -3.3
134,335 + H281DRAFT_05715 0.48 +1.6
134,416 + H281DRAFT_05715 0.53 -3.6
134,416 + H281DRAFT_05715 0.53 -0.0
134,417 - H281DRAFT_05715 0.53 -4.0
134,446 + H281DRAFT_05715 0.55 -3.2
134,446 + H281DRAFT_05715 0.55 -4.6
134,447 - H281DRAFT_05715 0.55 -3.0
134,471 - H281DRAFT_05715 0.57 -4.4
134,471 - H281DRAFT_05715 0.57 -1.9
134,471 - H281DRAFT_05715 0.57 -3.6
134,471 - H281DRAFT_05715 0.57 -3.4
134,566 + H281DRAFT_05715 0.63 -2.3
134,567 - H281DRAFT_05715 0.63 -4.6
134,593 + H281DRAFT_05715 0.65 -0.0
134,594 - H281DRAFT_05715 0.65 -4.0
134,605 + -0.4
134,620 - H281DRAFT_05715 0.67 -3.5
134,620 - H281DRAFT_05715 0.67 -2.9
134,696 + H281DRAFT_05715 0.72 -4.7
134,697 - H281DRAFT_05715 0.72 -2.9
134,719 + H281DRAFT_05715 0.73 -3.9
134,720 - H281DRAFT_05715 0.73 -2.9
134,720 - H281DRAFT_05715 0.73 -2.5
134,720 - H281DRAFT_05715 0.73 -3.9
134,743 + H281DRAFT_05715 0.75 -2.4
134,744 - H281DRAFT_05715 0.75 -5.3
134,869 - H281DRAFT_05715 0.83 -1.4
135,016 + -4.2
135,017 - -1.8
135,068 + -3.6
135,068 + -4.5
135,129 + -3.0
135,129 + -3.0
135,129 + -3.2
135,129 + -3.5
135,133 + -2.6
135,133 + -3.9
135,133 + -4.4
135,133 + -0.4
135,133 + -2.9
135,134 - -0.5
135,134 - +1.0
135,134 - -0.3
135,268 - +1.3
135,268 - +0.7
135,278 + -3.3
135,279 - +0.4
135,279 - +0.5
135,345 + -3.1
135,378 - -0.0
135,436 - +0.2
135,539 + -2.3
135,539 + -4.2
135,539 + -3.0
135,539 + -3.8
135,540 - -0.8
135,540 - +0.3
135,541 + -0.6
135,541 + -0.3
135,541 + +0.8
135,542 - +0.3
135,542 - -0.2
135,542 - +0.1
135,555 - H281DRAFT_05716 0.10 +0.4
135,565 + H281DRAFT_05716 0.12 +0.3
135,565 + H281DRAFT_05716 0.12 -0.5
135,566 - H281DRAFT_05716 0.12 +0.1
135,566 - H281DRAFT_05716 0.12 +0.0
135,582 + H281DRAFT_05716 0.14 +0.4
135,582 + H281DRAFT_05716 0.14 -1.1
135,583 - H281DRAFT_05716 0.14 +0.2
135,583 - H281DRAFT_05716 0.14 -0.0
135,583 - H281DRAFT_05716 0.14 +1.0
135,765 + H281DRAFT_05716 0.39 -0.2
135,766 - H281DRAFT_05716 0.40 +0.6
135,766 - H281DRAFT_05716 0.40 -0.0
135,781 - H281DRAFT_05716 0.42 +0.2
135,930 + H281DRAFT_05716 0.62 -0.1
135,931 - H281DRAFT_05716 0.63 -1.8
135,931 - H281DRAFT_05716 0.63 -0.4
136,004 + H281DRAFT_05716 0.73 -0.2
136,005 - H281DRAFT_05716 0.73 +0.9
136,005 - H281DRAFT_05716 0.73 +0.1
136,029 + H281DRAFT_05716 0.76 -1.1

Or see this region's nucleotide sequence