Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05681 and H281DRAFT_05682 are separated by 151 nucleotides H281DRAFT_05682 and H281DRAFT_05683 are separated by 155 nucleotides H281DRAFT_05683 and H281DRAFT_05684 are separated by 70 nucleotides
H281DRAFT_05681: H281DRAFT_05681 - transcriptional regulator, TetR family, at 96,999 to 97,667
_05681
H281DRAFT_05682: H281DRAFT_05682 - Sugar phosphate permease, at 97,819 to 99,102
_05682
H281DRAFT_05683: H281DRAFT_05683 - Nitroreductase, at 99,258 to 99,851
_05683
H281DRAFT_05684: H281DRAFT_05684 - Predicted arabinose efflux permease, MFS family, at 99,922 to 101,397
_05684
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 96.827 kb on + strand at 96.959 kb on + strand at 96.959 kb on + strand at 96.959 kb on + strand at 96.959 kb on + strand at 96.960 kb on - strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.962 kb on - strand at 96.962 kb on - strand at 96.962 kb on - strand at 96.962 kb on - strand at 97.035 kb on - strand at 97.087 kb on + strand, within H281DRAFT_05681 at 97.088 kb on - strand, within H281DRAFT_05681 at 97.105 kb on + strand, within H281DRAFT_05681 at 97.105 kb on + strand, within H281DRAFT_05681 at 97.176 kb on + strand, within H281DRAFT_05681 at 97.177 kb on - strand, within H281DRAFT_05681 at 97.328 kb on - strand, within H281DRAFT_05681 at 97.328 kb on - strand, within H281DRAFT_05681 at 97.384 kb on + strand, within H281DRAFT_05681 at 97.417 kb on + strand, within H281DRAFT_05681 at 97.418 kb on - strand, within H281DRAFT_05681 at 97.456 kb on + strand, within H281DRAFT_05681 at 97.634 kb on + strand at 97.770 kb on + strand at 97.841 kb on + strand at 97.841 kb on + strand at 98.009 kb on + strand, within H281DRAFT_05682 at 98.010 kb on - strand, within H281DRAFT_05682 at 98.010 kb on - strand, within H281DRAFT_05682 at 98.011 kb on + strand, within H281DRAFT_05682 at 98.012 kb on - strand, within H281DRAFT_05682 at 98.012 kb on - strand, within H281DRAFT_05682 at 98.012 kb on - strand, within H281DRAFT_05682 at 98.018 kb on + strand, within H281DRAFT_05682 at 98.323 kb on + strand, within H281DRAFT_05682 at 98.431 kb on + strand, within H281DRAFT_05682 at 98.432 kb on - strand, within H281DRAFT_05682 at 98.621 kb on - strand, within H281DRAFT_05682 at 98.743 kb on + strand, within H281DRAFT_05682 at 98.743 kb on + strand, within H281DRAFT_05682 at 98.746 kb on + strand, within H281DRAFT_05682 at 98.746 kb on + strand, within H281DRAFT_05682 at 98.747 kb on - strand, within H281DRAFT_05682 at 98.747 kb on - strand, within H281DRAFT_05682 at 98.747 kb on - strand, within H281DRAFT_05682 at 98.773 kb on + strand, within H281DRAFT_05682 at 98.773 kb on + strand, within H281DRAFT_05682 at 98.774 kb on - strand, within H281DRAFT_05682 at 98.774 kb on - strand, within H281DRAFT_05682 at 98.774 kb on - strand, within H281DRAFT_05682 at 98.774 kb on - strand, within H281DRAFT_05682 at 98.830 kb on + strand, within H281DRAFT_05682 at 98.994 kb on + strand at 98.995 kb on - strand at 98.998 kb on + strand at 98.998 kb on + strand at 98.998 kb on + strand at 98.999 kb on - strand at 98.999 kb on - strand at 99.061 kb on - strand at 99.061 kb on - strand at 99.110 kb on - strand at 99.149 kb on - strand at 99.160 kb on - strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.331 kb on - strand, within H281DRAFT_05683 at 99.402 kb on + strand, within H281DRAFT_05683 at 99.402 kb on + strand, within H281DRAFT_05683 at 99.403 kb on - strand, within H281DRAFT_05683 at 99.403 kb on - strand, within H281DRAFT_05683 at 99.404 kb on + strand, within H281DRAFT_05683 at 99.582 kb on + strand, within H281DRAFT_05683 at 99.582 kb on + strand, within H281DRAFT_05683 at 99.878 kb on - strand at 99.924 kb on - strand at 100.049 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 96,827 + -1.2 96,959 + +1.1 96,959 + -0.8 96,959 + -0.6 96,959 + -0.1 96,960 - -0.1 96,961 + +0.6 96,961 + +1.9 96,961 + -0.3 96,961 + -0.6 96,962 - -1.0 96,962 - +0.9 96,962 - +0.0 96,962 - -0.1 97,035 - +2.6 97,087 + H281DRAFT_05681 0.13 +0.4 97,088 - H281DRAFT_05681 0.13 -2.2 97,105 + H281DRAFT_05681 0.16 -0.9 97,105 + H281DRAFT_05681 0.16 -2.4 97,176 + H281DRAFT_05681 0.26 -1.0 97,177 - H281DRAFT_05681 0.27 -0.6 97,328 - H281DRAFT_05681 0.49 -3.1 97,328 - H281DRAFT_05681 0.49 -1.1 97,384 + H281DRAFT_05681 0.58 -1.5 97,417 + H281DRAFT_05681 0.62 -0.9 97,418 - H281DRAFT_05681 0.63 -2.4 97,456 + H281DRAFT_05681 0.68 +1.6 97,634 + -1.2 97,770 + -0.2 97,841 + +0.9 97,841 + +1.2 98,009 + H281DRAFT_05682 0.15 -0.4 98,010 - H281DRAFT_05682 0.15 -1.6 98,010 - H281DRAFT_05682 0.15 -0.6 98,011 + H281DRAFT_05682 0.15 -1.2 98,012 - H281DRAFT_05682 0.15 +1.1 98,012 - H281DRAFT_05682 0.15 +0.4 98,012 - H281DRAFT_05682 0.15 -1.0 98,018 + H281DRAFT_05682 0.15 -0.9 98,323 + H281DRAFT_05682 0.39 -0.9 98,431 + H281DRAFT_05682 0.48 -0.1 98,432 - H281DRAFT_05682 0.48 +0.4 98,621 - H281DRAFT_05682 0.62 -0.7 98,743 + H281DRAFT_05682 0.72 -0.6 98,743 + H281DRAFT_05682 0.72 +0.4 98,746 + H281DRAFT_05682 0.72 +0.9 98,746 + H281DRAFT_05682 0.72 -1.9 98,747 - H281DRAFT_05682 0.72 -0.5 98,747 - H281DRAFT_05682 0.72 +0.4 98,747 - H281DRAFT_05682 0.72 +1.0 98,773 + H281DRAFT_05682 0.74 +1.9 98,773 + H281DRAFT_05682 0.74 -0.6 98,774 - H281DRAFT_05682 0.74 +1.2 98,774 - H281DRAFT_05682 0.74 +0.2 98,774 - H281DRAFT_05682 0.74 +0.3 98,774 - H281DRAFT_05682 0.74 -1.1 98,830 + H281DRAFT_05682 0.79 +0.3 98,994 + +1.4 98,995 - +2.6 98,998 + +0.4 98,998 + +0.5 98,998 + -0.1 98,999 - +0.2 98,999 - -0.7 99,061 - -0.5 99,061 - +0.0 99,110 - +0.2 99,149 - +0.2 99,160 - +0.7 99,204 + +0.5 99,204 + +1.6 99,204 + -0.2 99,204 + +0.8 99,204 + +0.1 99,204 + +0.9 99,204 + +0.1 99,204 + +0.6 99,204 + -0.6 99,205 - +0.2 99,205 - +0.3 99,205 - -0.0 99,205 - -0.2 99,205 - +2.5 99,205 - -0.5 99,205 - -0.0 99,205 - -0.2 99,205 - -0.1 99,205 - +0.2 99,205 - +0.0 99,331 - H281DRAFT_05683 0.12 -0.4 99,402 + H281DRAFT_05683 0.24 -0.3 99,402 + H281DRAFT_05683 0.24 -0.1 99,403 - H281DRAFT_05683 0.24 -0.3 99,403 - H281DRAFT_05683 0.24 +0.3 99,404 + H281DRAFT_05683 0.25 -0.2 99,582 + H281DRAFT_05683 0.55 +0.2 99,582 + H281DRAFT_05683 0.55 -3.1 99,878 - +0.4 99,924 - +0.3 100,049 + -1.6
Or see this region's nucleotide sequence