Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05343 and H281DRAFT_05344 are separated by 316 nucleotides H281DRAFT_05344 and H281DRAFT_05345 are separated by 61 nucleotides H281DRAFT_05345 and H281DRAFT_05346 are separated by 132 nucleotides
H281DRAFT_05343: H281DRAFT_05343 - transcriptional regulator, TetR family, at 95,316 to 96,119
_05343
H281DRAFT_05344: H281DRAFT_05344 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 96,436 to 96,957
_05344
H281DRAFT_05345: H281DRAFT_05345 - Fur family transcriptional regulator, zinc uptake regulator, at 97,019 to 97,651
_05345
H281DRAFT_05346: H281DRAFT_05346 - Glutathione S-transferase, at 97,784 to 98,410
_05346
Position (kb) 96
97 Strain fitness (log2 ratio) -2
-1
0
1 at 95.637 kb on + strand, within H281DRAFT_05343 at 96.098 kb on + strand at 96.099 kb on - strand at 96.129 kb on + strand at 96.130 kb on - strand at 96.356 kb on - strand at 96.720 kb on - strand, within H281DRAFT_05344 at 96.720 kb on - strand, within H281DRAFT_05344 at 96.755 kb on - strand, within H281DRAFT_05344 at 96.845 kb on - strand, within H281DRAFT_05344 at 96.858 kb on + strand, within H281DRAFT_05344 at 97.020 kb on + strand at 97.020 kb on + strand at 97.021 kb on - strand at 97.137 kb on + strand, within H281DRAFT_05345 at 97.267 kb on + strand, within H281DRAFT_05345 at 97.267 kb on + strand, within H281DRAFT_05345 at 97.637 kb on - strand at 97.638 kb on + strand at 97.937 kb on - strand, within H281DRAFT_05346
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 95,637 + H281DRAFT_05343 0.40 -2.5 96,098 + -0.7 96,099 - +0.1 96,129 + +0.1 96,130 - -0.1 96,356 - +0.3 96,720 - H281DRAFT_05344 0.54 +0.2 96,720 - H281DRAFT_05344 0.54 -1.1 96,755 - H281DRAFT_05344 0.61 +0.1 96,845 - H281DRAFT_05344 0.78 +0.1 96,858 + H281DRAFT_05344 0.81 +0.5 97,020 + -0.4 97,020 + +0.2 97,021 - -1.0 97,137 + H281DRAFT_05345 0.19 +0.5 97,267 + H281DRAFT_05345 0.39 +1.3 97,267 + H281DRAFT_05345 0.39 -2.2 97,637 - -0.5 97,638 + +0.6 97,937 - H281DRAFT_05346 0.24 +0.9
Or see this region's nucleotide sequence