Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05334 and H281DRAFT_05335 are separated by 49 nucleotides H281DRAFT_05335 and H281DRAFT_05336 are separated by 159 nucleotides
H281DRAFT_05334: H281DRAFT_05334 - Short-chain dehydrogenase, at 84,263 to 85,171
_05334
H281DRAFT_05335: H281DRAFT_05335 - Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD, at 85,221 to 86,816
_05335
H281DRAFT_05336: H281DRAFT_05336 - transcriptional regulator, MerR family, at 86,976 to 87,833
_05336
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1 at 84.743 kb on - strand, within H281DRAFT_05334 at 85.212 kb on - strand at 85.483 kb on + strand, within H281DRAFT_05335 at 85.888 kb on + strand, within H281DRAFT_05335 at 86.382 kb on + strand, within H281DRAFT_05335 at 86.521 kb on + strand, within H281DRAFT_05335 at 86.522 kb on - strand, within H281DRAFT_05335 at 86.832 kb on - strand at 86.835 kb on - strand at 86.903 kb on + strand at 86.917 kb on + strand at 86.917 kb on + strand at 86.977 kb on + strand at 87.055 kb on + strand at 87.110 kb on + strand, within H281DRAFT_05336 at 87.448 kb on + strand, within H281DRAFT_05336 at 87.624 kb on - strand, within H281DRAFT_05336 at 87.625 kb on + strand, within H281DRAFT_05336 at 87.737 kb on - strand, within H281DRAFT_05336
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 84,743 - H281DRAFT_05334 0.53 +1.6 85,212 - +1.2 85,483 + H281DRAFT_05335 0.16 +0.2 85,888 + H281DRAFT_05335 0.42 +0.2 86,382 + H281DRAFT_05335 0.73 -0.2 86,521 + H281DRAFT_05335 0.81 -1.5 86,522 - H281DRAFT_05335 0.82 +0.3 86,832 - -0.3 86,835 - -0.1 86,903 + +0.5 86,917 + -0.0 86,917 + +1.1 86,977 + -0.3 87,055 + -0.8 87,110 + H281DRAFT_05336 0.16 +0.1 87,448 + H281DRAFT_05336 0.55 -0.1 87,624 - H281DRAFT_05336 0.76 -2.0 87,625 + H281DRAFT_05336 0.76 -1.1 87,737 - H281DRAFT_05336 0.89 +0.4
Or see this region's nucleotide sequence