Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05248 and H281DRAFT_05249 are separated by 193 nucleotides H281DRAFT_05249 and H281DRAFT_05250 are separated by 469 nucleotides H281DRAFT_05250 and H281DRAFT_05251 overlap by 4 nucleotides
H281DRAFT_05248: H281DRAFT_05248 - hypothetical protein, at 215,788 to 215,940
_05248
H281DRAFT_05249: H281DRAFT_05249 - hypothetical protein, at 216,134 to 216,274
_05249
H281DRAFT_05250: H281DRAFT_05250 - phosphatidylglycerol lysyltransferase, at 216,744 to 219,338
_05250
H281DRAFT_05251: H281DRAFT_05251 - Type IV secretory pathway, VirJ component, at 219,335 to 220,612
_05251
Position (kb) 216
217
218
219
220 Strain fitness (log2 ratio) -1
0
1 at 215.820 kb on + strand, within H281DRAFT_05248 at 215.821 kb on - strand, within H281DRAFT_05248 at 215.938 kb on + strand at 216.026 kb on + strand at 216.113 kb on - strand at 216.119 kb on + strand at 216.240 kb on + strand, within H281DRAFT_05249 at 216.240 kb on + strand, within H281DRAFT_05249 at 216.240 kb on + strand, within H281DRAFT_05249 at 216.514 kb on + strand at 216.522 kb on + strand at 216.758 kb on + strand at 216.758 kb on + strand at 216.758 kb on + strand at 216.758 kb on + strand at 216.759 kb on - strand at 216.765 kb on - strand at 216.826 kb on + strand at 216.827 kb on - strand at 216.981 kb on + strand at 216.982 kb on - strand at 217.151 kb on + strand, within H281DRAFT_05250 at 217.151 kb on + strand, within H281DRAFT_05250 at 217.152 kb on - strand, within H281DRAFT_05250 at 217.184 kb on - strand, within H281DRAFT_05250 at 217.216 kb on + strand, within H281DRAFT_05250 at 217.216 kb on + strand, within H281DRAFT_05250 at 217.216 kb on + strand, within H281DRAFT_05250 at 217.216 kb on + strand, within H281DRAFT_05250 at 217.216 kb on + strand, within H281DRAFT_05250 at 217.451 kb on - strand, within H281DRAFT_05250 at 217.451 kb on - strand, within H281DRAFT_05250 at 217.451 kb on - strand, within H281DRAFT_05250 at 217.451 kb on - strand, within H281DRAFT_05250 at 217.524 kb on + strand, within H281DRAFT_05250 at 217.559 kb on + strand, within H281DRAFT_05250 at 217.654 kb on - strand, within H281DRAFT_05250 at 218.220 kb on + strand, within H281DRAFT_05250 at 218.220 kb on + strand, within H281DRAFT_05250 at 218.220 kb on + strand, within H281DRAFT_05250 at 218.223 kb on - strand, within H281DRAFT_05250 at 218.487 kb on + strand, within H281DRAFT_05250 at 218.497 kb on - strand, within H281DRAFT_05250 at 218.611 kb on - strand, within H281DRAFT_05250 at 218.611 kb on - strand, within H281DRAFT_05250 at 218.901 kb on + strand, within H281DRAFT_05250 at 219.033 kb on + strand, within H281DRAFT_05250 at 219.258 kb on + strand at 219.491 kb on + strand, within H281DRAFT_05251 at 220.275 kb on - strand, within H281DRAFT_05251
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 215,820 + H281DRAFT_05248 0.21 -1.3 215,821 - H281DRAFT_05248 0.22 +0.6 215,938 + +0.9 216,026 + +0.6 216,113 - +0.3 216,119 + -0.9 216,240 + H281DRAFT_05249 0.75 -1.1 216,240 + H281DRAFT_05249 0.75 -0.5 216,240 + H281DRAFT_05249 0.75 -0.9 216,514 + -0.6 216,522 + -1.0 216,758 + +0.5 216,758 + +0.5 216,758 + +1.7 216,758 + +0.2 216,759 - +0.1 216,765 - -0.8 216,826 + +1.5 216,827 - +0.3 216,981 + +0.5 216,982 - -1.7 217,151 + H281DRAFT_05250 0.16 +1.5 217,151 + H281DRAFT_05250 0.16 +0.7 217,152 - H281DRAFT_05250 0.16 +1.3 217,184 - H281DRAFT_05250 0.17 +0.4 217,216 + H281DRAFT_05250 0.18 +1.1 217,216 + H281DRAFT_05250 0.18 -1.0 217,216 + H281DRAFT_05250 0.18 +0.8 217,216 + H281DRAFT_05250 0.18 -0.6 217,216 + H281DRAFT_05250 0.18 +0.3 217,451 - H281DRAFT_05250 0.27 +1.3 217,451 - H281DRAFT_05250 0.27 -0.7 217,451 - H281DRAFT_05250 0.27 +0.1 217,451 - H281DRAFT_05250 0.27 +1.7 217,524 + H281DRAFT_05250 0.30 +1.7 217,559 + H281DRAFT_05250 0.31 +0.2 217,654 - H281DRAFT_05250 0.35 +0.0 218,220 + H281DRAFT_05250 0.57 -0.6 218,220 + H281DRAFT_05250 0.57 -0.3 218,220 + H281DRAFT_05250 0.57 +1.1 218,223 - H281DRAFT_05250 0.57 -0.2 218,487 + H281DRAFT_05250 0.67 +0.4 218,497 - H281DRAFT_05250 0.68 +1.7 218,611 - H281DRAFT_05250 0.72 -0.2 218,611 - H281DRAFT_05250 0.72 +0.3 218,901 + H281DRAFT_05250 0.83 +0.1 219,033 + H281DRAFT_05250 0.88 -1.3 219,258 + +0.6 219,491 + H281DRAFT_05251 0.12 +0.8 220,275 - H281DRAFT_05251 0.74 +0.0
Or see this region's nucleotide sequence