Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05194

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05193 and H281DRAFT_05194 are separated by 313 nucleotidesH281DRAFT_05194 and H281DRAFT_05195 are separated by 273 nucleotides H281DRAFT_05193: H281DRAFT_05193 - hypothetical protein, at 150,085 to 150,717 _05193 H281DRAFT_05194: H281DRAFT_05194 - penicillin-binding protein 1A, at 151,031 to 153,694 _05194 H281DRAFT_05195: H281DRAFT_05195 - KDO2-lipid IV(A) lauroyltransferase, at 153,968 to 154,933 _05195 Position (kb) 151 152 153 154Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 150.082 kb on + strandat 150.083 kb on - strandat 150.087 kb on - strandat 150.087 kb on - strandat 150.087 kb on - strandat 150.630 kb on + strand, within H281DRAFT_05193at 150.689 kb on - strandat 150.730 kb on + strandat 150.730 kb on + strandat 150.731 kb on - strandat 150.731 kb on - strandat 150.731 kb on - strandat 150.731 kb on - strandat 150.731 kb on - strandat 150.731 kb on - strandat 150.793 kb on + strandat 150.793 kb on + strandat 150.794 kb on - strandat 150.794 kb on - strandat 151.040 kb on + strandat 151.040 kb on + strandat 151.041 kb on - strandat 151.041 kb on - strandat 151.041 kb on - strandat 151.183 kb on + strandat 151.253 kb on + strandat 151.254 kb on - strandat 151.254 kb on - strandat 151.469 kb on + strand, within H281DRAFT_05194at 151.470 kb on - strand, within H281DRAFT_05194at 151.472 kb on - strand, within H281DRAFT_05194at 151.590 kb on - strand, within H281DRAFT_05194at 151.728 kb on - strand, within H281DRAFT_05194at 151.728 kb on - strand, within H281DRAFT_05194at 151.805 kb on + strand, within H281DRAFT_05194at 151.805 kb on + strand, within H281DRAFT_05194at 151.820 kb on + strand, within H281DRAFT_05194at 151.944 kb on - strand, within H281DRAFT_05194at 151.988 kb on + strand, within H281DRAFT_05194at 151.988 kb on + strand, within H281DRAFT_05194at 152.018 kb on + strand, within H281DRAFT_05194at 152.037 kb on - strand, within H281DRAFT_05194at 152.087 kb on + strand, within H281DRAFT_05194at 152.087 kb on + strand, within H281DRAFT_05194at 152.106 kb on - strand, within H281DRAFT_05194at 152.135 kb on + strand, within H281DRAFT_05194at 152.135 kb on + strand, within H281DRAFT_05194at 152.136 kb on - strand, within H281DRAFT_05194at 152.136 kb on - strand, within H281DRAFT_05194at 152.144 kb on + strand, within H281DRAFT_05194at 152.144 kb on + strand, within H281DRAFT_05194at 152.159 kb on + strand, within H281DRAFT_05194at 152.437 kb on + strand, within H281DRAFT_05194at 152.906 kb on + strand, within H281DRAFT_05194at 153.035 kb on + strand, within H281DRAFT_05194at 153.060 kb on - strand, within H281DRAFT_05194at 153.180 kb on - strand, within H281DRAFT_05194at 153.311 kb on + strand, within H281DRAFT_05194at 153.416 kb on + strand, within H281DRAFT_05194at 153.500 kb on + strandat 153.794 kb on - strandat 153.797 kb on + strandat 153.798 kb on - strandat 153.798 kb on - strandat 153.869 kb on + strandat 153.869 kb on + strandat 153.869 kb on + strandat 153.869 kb on + strandat 153.870 kb on - strandat 153.886 kb on + strandat 153.887 kb on - strandat 154.024 kb on - strandat 154.111 kb on - strand, within H281DRAFT_05195at 154.287 kb on - strand, within H281DRAFT_05195at 154.287 kb on - strand, within H281DRAFT_05195at 154.287 kb on - strand, within H281DRAFT_05195at 154.399 kb on - strand, within H281DRAFT_05195at 154.439 kb on + strand, within H281DRAFT_05195at 154.440 kb on - strand, within H281DRAFT_05195at 154.440 kb on - strand, within H281DRAFT_05195

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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150,082 + -0.1
150,083 - +0.3
150,087 - +1.0
150,087 - +0.8
150,087 - +2.8
150,630 + H281DRAFT_05193 0.86 -0.0
150,689 - -1.1
150,730 + -0.3
150,730 + -0.1
150,731 - +3.1
150,731 - +0.0
150,731 - -0.8
150,731 - +1.1
150,731 - +0.0
150,731 - +1.2
150,793 + +0.5
150,793 + -0.4
150,794 - -1.6
150,794 - +0.4
151,040 + -0.6
151,040 + -0.6
151,041 - -2.4
151,041 - -1.4
151,041 - -3.6
151,183 + +0.0
151,253 + -2.4
151,254 - +0.4
151,254 - -1.4
151,469 + H281DRAFT_05194 0.16 -4.5
151,470 - H281DRAFT_05194 0.16 -3.0
151,472 - H281DRAFT_05194 0.17 -2.6
151,590 - H281DRAFT_05194 0.21 -4.9
151,728 - H281DRAFT_05194 0.26 -3.6
151,728 - H281DRAFT_05194 0.26 -4.3
151,805 + H281DRAFT_05194 0.29 -5.1
151,805 + H281DRAFT_05194 0.29 -3.8
151,820 + H281DRAFT_05194 0.30 -2.9
151,944 - H281DRAFT_05194 0.34 -3.1
151,988 + H281DRAFT_05194 0.36 -1.7
151,988 + H281DRAFT_05194 0.36 -4.3
152,018 + H281DRAFT_05194 0.37 -4.3
152,037 - H281DRAFT_05194 0.38 -4.0
152,087 + H281DRAFT_05194 0.40 -3.9
152,087 + H281DRAFT_05194 0.40 -3.1
152,106 - H281DRAFT_05194 0.40 -4.2
152,135 + H281DRAFT_05194 0.41 -3.2
152,135 + H281DRAFT_05194 0.41 -1.1
152,136 - H281DRAFT_05194 0.41 -2.6
152,136 - H281DRAFT_05194 0.41 -0.6
152,144 + H281DRAFT_05194 0.42 -3.1
152,144 + H281DRAFT_05194 0.42 -4.6
152,159 + H281DRAFT_05194 0.42 -2.6
152,437 + H281DRAFT_05194 0.53 -4.4
152,906 + H281DRAFT_05194 0.70 -3.4
153,035 + H281DRAFT_05194 0.75 -2.0
153,060 - H281DRAFT_05194 0.76 -3.6
153,180 - H281DRAFT_05194 0.81 -4.4
153,311 + H281DRAFT_05194 0.86 -0.1
153,416 + H281DRAFT_05194 0.90 -3.8
153,500 + -0.9
153,794 - -0.5
153,797 + +0.2
153,798 - -0.4
153,798 - -0.1
153,869 + -1.3
153,869 + -0.0
153,869 + -0.1
153,869 + +0.4
153,870 - -0.9
153,886 + +0.8
153,887 - +0.4
154,024 - -0.1
154,111 - H281DRAFT_05195 0.15 -1.3
154,287 - H281DRAFT_05195 0.33 +0.4
154,287 - H281DRAFT_05195 0.33 +1.6
154,287 - H281DRAFT_05195 0.33 -0.2
154,399 - H281DRAFT_05195 0.45 -1.4
154,439 + H281DRAFT_05195 0.49 -0.1
154,440 - H281DRAFT_05195 0.49 -0.5
154,440 - H281DRAFT_05195 0.49 -0.4

Or see this region's nucleotide sequence