Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05090 and H281DRAFT_05091 are separated by 550 nucleotides H281DRAFT_05091 and H281DRAFT_05092 are separated by 96 nucleotides H281DRAFT_05092 and H281DRAFT_05093 are separated by 221 nucleotides H281DRAFT_05093 and H281DRAFT_05094 are separated by 218 nucleotides
H281DRAFT_05090: H281DRAFT_05090 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 33,607 to 34,932
_05090
H281DRAFT_05091: H281DRAFT_05091 - Quinol monooxygenase YgiN, at 35,483 to 35,773
_05091
H281DRAFT_05092: H281DRAFT_05092 - hypothetical protein, at 35,870 to 36,127
_05092
H281DRAFT_05093: H281DRAFT_05093 - hypothetical protein, at 36,349 to 36,588
_05093
H281DRAFT_05094: H281DRAFT_05094 - Uncharacterized SAM-binding protein YcdF, DUF218 family, at 36,807 to 37,484
_05094
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.909 kb on - strand at 34.999 kb on + strand at 35.000 kb on - strand at 35.000 kb on - strand at 35.002 kb on + strand at 35.100 kb on + strand at 35.100 kb on + strand at 35.100 kb on + strand at 35.101 kb on - strand at 35.317 kb on + strand at 35.317 kb on + strand at 35.318 kb on - strand at 35.528 kb on + strand, within H281DRAFT_05091 at 35.708 kb on + strand, within H281DRAFT_05091 at 35.709 kb on - strand, within H281DRAFT_05091 at 35.771 kb on + strand at 35.771 kb on + strand at 35.771 kb on + strand at 35.772 kb on - strand at 35.871 kb on + strand at 35.937 kb on + strand, within H281DRAFT_05092 at 35.938 kb on - strand, within H281DRAFT_05092 at 36.157 kb on + strand at 36.192 kb on + strand at 36.193 kb on - strand at 36.193 kb on - strand at 36.226 kb on - strand at 36.233 kb on + strand at 36.234 kb on - strand at 36.592 kb on + strand at 36.592 kb on + strand at 36.593 kb on - strand at 36.593 kb on - strand at 36.621 kb on + strand at 36.622 kb on - strand at 36.622 kb on - strand at 36.622 kb on - strand at 36.655 kb on - strand at 36.664 kb on + strand at 36.664 kb on + strand at 36.665 kb on - strand at 36.665 kb on - strand at 36.688 kb on + strand at 36.688 kb on + strand at 36.708 kb on + strand at 36.708 kb on + strand at 36.708 kb on + strand at 36.709 kb on - strand at 36.729 kb on + strand at 36.830 kb on - strand at 36.830 kb on - strand at 36.830 kb on - strand at 36.838 kb on + strand at 36.865 kb on - strand at 36.865 kb on - strand at 36.895 kb on + strand, within H281DRAFT_05094 at 37.014 kb on + strand, within H281DRAFT_05094 at 37.015 kb on - strand, within H281DRAFT_05094 at 37.053 kb on + strand, within H281DRAFT_05094 at 37.054 kb on - strand, within H281DRAFT_05094 at 37.054 kb on - strand, within H281DRAFT_05094
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 34,909 - -0.1 34,999 + +1.3 35,000 - -1.4 35,000 - +0.7 35,002 + -0.4 35,100 + +1.3 35,100 + +1.6 35,100 + +2.4 35,101 - -1.0 35,317 + +0.0 35,317 + +0.5 35,318 - +0.1 35,528 + H281DRAFT_05091 0.15 +1.7 35,708 + H281DRAFT_05091 0.77 +0.5 35,709 - H281DRAFT_05091 0.78 -0.3 35,771 + -0.1 35,771 + -0.1 35,771 + -0.7 35,772 - +0.2 35,871 + +0.9 35,937 + H281DRAFT_05092 0.26 -1.0 35,938 - H281DRAFT_05092 0.26 -1.2 36,157 + +0.1 36,192 + -0.1 36,193 - +0.9 36,193 - -2.4 36,226 - +0.1 36,233 + +0.5 36,234 - +0.3 36,592 + -0.2 36,592 + -0.6 36,593 - +0.0 36,593 - +0.0 36,621 + +1.7 36,622 - +0.7 36,622 - +0.5 36,622 - +0.7 36,655 - -0.2 36,664 + -0.8 36,664 + +0.1 36,665 - -0.2 36,665 - -1.7 36,688 + +0.0 36,688 + +1.1 36,708 + -0.3 36,708 + -0.4 36,708 + +0.3 36,709 - +0.1 36,729 + +0.7 36,830 - -0.0 36,830 - -0.2 36,830 - -0.7 36,838 + +0.2 36,865 - +0.0 36,865 - +0.5 36,895 + H281DRAFT_05094 0.13 +0.9 37,014 + H281DRAFT_05094 0.31 -0.9 37,015 - H281DRAFT_05094 0.31 +0.7 37,053 + H281DRAFT_05094 0.36 -0.3 37,054 - H281DRAFT_05094 0.36 +1.1 37,054 - H281DRAFT_05094 0.36 -0.4
Or see this region's nucleotide sequence