Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05060 and H281DRAFT_05061 are separated by 145 nucleotides H281DRAFT_05061 and H281DRAFT_05062 are separated by 161 nucleotides H281DRAFT_05062 and H281DRAFT_05063 are separated by 75 nucleotides
H281DRAFT_05060: H281DRAFT_05060 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 1 to 432
_05060
H281DRAFT_05061: H281DRAFT_05061 - Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC, at 578 to 1,054
_05061
H281DRAFT_05062: H281DRAFT_05062 - MFS transporter, putative metabolite:H+ symporter, at 1,216 to 2,655
_05062
H281DRAFT_05063: H281DRAFT_05063 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit, at 2,731 to 4,689
_05063
Position (kb) 1
2
3 Strain fitness (log2 ratio) -1
0
1
2 at 0.561 kb on + strand at 0.599 kb on - strand at 1.152 kb on + strand at 1.174 kb on - strand at 1.174 kb on - strand at 1.394 kb on + strand, within H281DRAFT_05062 at 1.458 kb on - strand, within H281DRAFT_05062 at 2.081 kb on - strand, within H281DRAFT_05062 at 2.140 kb on - strand, within H281DRAFT_05062 at 2.165 kb on + strand, within H281DRAFT_05062 at 2.165 kb on + strand, within H281DRAFT_05062 at 2.165 kb on + strand, within H281DRAFT_05062 at 2.165 kb on + strand, within H281DRAFT_05062 at 2.166 kb on - strand, within H281DRAFT_05062 at 2.166 kb on - strand, within H281DRAFT_05062 at 2.570 kb on - strand at 2.706 kb on + strand at 2.717 kb on - strand at 2.991 kb on - strand, within H281DRAFT_05063 at 2.991 kb on - strand, within H281DRAFT_05063 at 3.020 kb on - strand, within H281DRAFT_05063 at 3.086 kb on + strand, within H281DRAFT_05063 at 3.117 kb on + strand, within H281DRAFT_05063 at 3.138 kb on + strand, within H281DRAFT_05063 at 3.139 kb on - strand, within H281DRAFT_05063 at 3.139 kb on - strand, within H281DRAFT_05063 at 3.139 kb on - strand, within H281DRAFT_05063
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 561 + -0.0 599 - +0.0 1,152 + -0.5 1,174 - +0.5 1,174 - +0.0 1,394 + H281DRAFT_05062 0.12 -0.3 1,458 - H281DRAFT_05062 0.17 +0.1 2,081 - H281DRAFT_05062 0.60 -0.8 2,140 - H281DRAFT_05062 0.64 +0.7 2,165 + H281DRAFT_05062 0.66 +2.0 2,165 + H281DRAFT_05062 0.66 -1.1 2,165 + H281DRAFT_05062 0.66 +0.1 2,165 + H281DRAFT_05062 0.66 -0.3 2,166 - H281DRAFT_05062 0.66 -0.4 2,166 - H281DRAFT_05062 0.66 -0.6 2,570 - -1.1 2,706 + -1.7 2,717 - -1.3 2,991 - H281DRAFT_05063 0.13 -0.7 2,991 - H281DRAFT_05063 0.13 +0.8 3,020 - H281DRAFT_05063 0.15 +0.7 3,086 + H281DRAFT_05063 0.18 -0.1 3,117 + H281DRAFT_05063 0.20 +0.6 3,138 + H281DRAFT_05063 0.21 +1.3 3,139 - H281DRAFT_05063 0.21 +0.8 3,139 - H281DRAFT_05063 0.21 -0.1 3,139 - H281DRAFT_05063 0.21 +0.7
Or see this region's nucleotide sequence