Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04967 and H281DRAFT_04968 are separated by 227 nucleotides H281DRAFT_04968 and H281DRAFT_04969 are separated by 312 nucleotides H281DRAFT_04969 and H281DRAFT_04970 overlap by 4 nucleotides H281DRAFT_04970 and H281DRAFT_04971 are separated by 79 nucleotides
H281DRAFT_04967: H281DRAFT_04967 - protein of unknown function (DUF1857), at 150,826 to 151,308
_04967
H281DRAFT_04968: H281DRAFT_04968 - Hemin uptake protein hemP, at 151,536 to 151,799
_04968
H281DRAFT_04969: H281DRAFT_04969 - 4Fe-4S binding domain-containing protein, at 152,112 to 153,518
_04969
H281DRAFT_04970: H281DRAFT_04970 - high-affinity iron transporter, at 153,515 to 154,360
_04970
H281DRAFT_04971: H281DRAFT_04971 - Predicted periplasmic lipoprotein involved in iron transport, at 154,440 to 154,772
_04971
Position (kb) 152
153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 151.159 kb on + strand, within H281DRAFT_04967 at 151.248 kb on + strand, within H281DRAFT_04967 at 151.270 kb on + strand at 151.270 kb on + strand at 151.270 kb on + strand at 151.271 kb on - strand at 151.271 kb on - strand at 151.271 kb on - strand at 151.326 kb on + strand at 151.327 kb on - strand at 151.327 kb on - strand at 151.718 kb on + strand, within H281DRAFT_04968 at 151.752 kb on + strand, within H281DRAFT_04968 at 151.752 kb on + strand, within H281DRAFT_04968 at 151.798 kb on - strand at 151.798 kb on - strand at 151.855 kb on + strand at 151.863 kb on - strand at 151.894 kb on - strand at 151.976 kb on - strand at 152.009 kb on + strand at 152.040 kb on - strand at 152.072 kb on - strand at 152.072 kb on - strand at 152.095 kb on + strand at 152.096 kb on - strand at 152.221 kb on + strand at 152.557 kb on + strand, within H281DRAFT_04969 at 152.707 kb on + strand, within H281DRAFT_04969 at 152.828 kb on + strand, within H281DRAFT_04969 at 152.829 kb on - strand, within H281DRAFT_04969 at 152.829 kb on - strand, within H281DRAFT_04969 at 152.853 kb on - strand at 152.853 kb on - strand, within H281DRAFT_04969 at 152.853 kb on - strand, within H281DRAFT_04969 at 152.954 kb on - strand, within H281DRAFT_04969 at 153.011 kb on - strand, within H281DRAFT_04969 at 153.011 kb on - strand, within H281DRAFT_04969 at 153.011 kb on - strand, within H281DRAFT_04969 at 153.133 kb on + strand, within H281DRAFT_04969 at 153.133 kb on + strand, within H281DRAFT_04969 at 153.134 kb on - strand, within H281DRAFT_04969 at 153.134 kb on - strand, within H281DRAFT_04969 at 153.134 kb on - strand, within H281DRAFT_04969 at 153.413 kb on - strand at 153.413 kb on - strand at 153.512 kb on + strand at 153.577 kb on - strand at 153.591 kb on + strand at 153.856 kb on - strand, within H281DRAFT_04970 at 154.246 kb on - strand, within H281DRAFT_04970 at 154.346 kb on + strand at 154.347 kb on - strand at 154.347 kb on - strand at 154.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 151,159 + H281DRAFT_04967 0.69 -1.6 151,248 + H281DRAFT_04967 0.87 +0.2 151,270 + -0.6 151,270 + +0.1 151,270 + +0.2 151,271 - -0.7 151,271 - -0.3 151,271 - -0.3 151,326 + -1.7 151,327 - -0.2 151,327 - -0.2 151,718 + H281DRAFT_04968 0.69 +0.1 151,752 + H281DRAFT_04968 0.82 -0.8 151,752 + H281DRAFT_04968 0.82 -0.4 151,798 - +0.0 151,798 - +0.1 151,855 + -1.0 151,863 - -0.4 151,894 - -0.0 151,976 - +0.4 152,009 + -0.0 152,040 - +0.3 152,072 - -0.5 152,072 - +1.6 152,095 + -0.2 152,096 - +0.1 152,221 + -0.6 152,557 + H281DRAFT_04969 0.32 -1.3 152,707 + H281DRAFT_04969 0.42 +0.1 152,828 + H281DRAFT_04969 0.51 +2.0 152,829 - H281DRAFT_04969 0.51 -0.6 152,829 - H281DRAFT_04969 0.51 +1.0 152,853 - -0.2 152,853 - H281DRAFT_04969 0.53 -0.5 152,853 - H281DRAFT_04969 0.53 -2.2 152,954 - H281DRAFT_04969 0.60 -0.2 153,011 - H281DRAFT_04969 0.64 -1.5 153,011 - H281DRAFT_04969 0.64 -0.2 153,011 - H281DRAFT_04969 0.64 -0.8 153,133 + H281DRAFT_04969 0.73 -1.6 153,133 + H281DRAFT_04969 0.73 -1.5 153,134 - H281DRAFT_04969 0.73 +1.0 153,134 - H281DRAFT_04969 0.73 -0.2 153,134 - H281DRAFT_04969 0.73 -0.3 153,413 - -0.8 153,413 - +2.0 153,512 + -0.6 153,577 - -1.1 153,591 + -0.3 153,856 - H281DRAFT_04970 0.40 +0.1 154,246 - H281DRAFT_04970 0.86 -1.5 154,346 + -1.6 154,347 - -0.7 154,347 - -1.0 154,442 - +0.6
Or see this region's nucleotide sequence