Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04876 and H281DRAFT_04877 are separated by 34 nucleotides H281DRAFT_04877 and H281DRAFT_04878 are separated by 91 nucleotides H281DRAFT_04878 and H281DRAFT_04879 are separated by 251 nucleotides
H281DRAFT_04876: H281DRAFT_04876 - hypothetical protein, at 20,454 to 20,636
_04876
H281DRAFT_04877: H281DRAFT_04877 - Predicted dithiol-disulfide oxidoreductase, DUF899 family, at 20,671 to 21,441
_04877
H281DRAFT_04878: H281DRAFT_04878 - transcriptional regulator, ArsR family, at 21,533 to 21,958
_04878
H281DRAFT_04879: H281DRAFT_04879 - putative MFS transporter, AGZA family, xanthine/uracil permease, at 22,210 to 23,592
_04879
Position (kb) 21
22 Strain fitness (log2 ratio) -1
0
1 at 20.545 kb on - strand, within H281DRAFT_04876 at 20.715 kb on - strand at 20.835 kb on - strand, within H281DRAFT_04877 at 20.865 kb on + strand, within H281DRAFT_04877 at 20.867 kb on + strand, within H281DRAFT_04877 at 20.922 kb on + strand, within H281DRAFT_04877 at 21.047 kb on - strand, within H281DRAFT_04877 at 21.347 kb on - strand, within H281DRAFT_04877 at 21.475 kb on + strand at 21.480 kb on - strand at 21.767 kb on - strand, within H281DRAFT_04878 at 21.965 kb on - strand at 22.002 kb on - strand at 22.232 kb on + strand at 22.372 kb on + strand, within H281DRAFT_04879 at 22.457 kb on + strand, within H281DRAFT_04879 at 22.647 kb on + strand at 22.790 kb on - strand, within H281DRAFT_04879 at 22.874 kb on - strand, within H281DRAFT_04879
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 20,545 - H281DRAFT_04876 0.50 +0.5 20,715 - +1.0 20,835 - H281DRAFT_04877 0.21 +0.7 20,865 + H281DRAFT_04877 0.25 -0.6 20,867 + H281DRAFT_04877 0.25 +0.0 20,922 + H281DRAFT_04877 0.33 +0.4 21,047 - H281DRAFT_04877 0.49 -0.6 21,347 - H281DRAFT_04877 0.88 -0.0 21,475 + +0.2 21,480 - -0.1 21,767 - H281DRAFT_04878 0.55 +0.2 21,965 - -0.4 22,002 - -0.2 22,232 + -0.7 22,372 + H281DRAFT_04879 0.12 -1.2 22,457 + H281DRAFT_04879 0.18 -0.1 22,647 + +0.4 22,790 - H281DRAFT_04879 0.42 +1.0 22,874 - H281DRAFT_04879 0.48 +0.4
Or see this region's nucleotide sequence