Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04678 and H281DRAFT_04679 are separated by 136 nucleotides H281DRAFT_04679 and H281DRAFT_04680 are separated by 144 nucleotides H281DRAFT_04680 and H281DRAFT_04681 are separated by 37 nucleotides
H281DRAFT_04678: H281DRAFT_04678 - 4-hydroxybenzoate polyprenyltransferase, at 81,715 to 82,578
_04678
H281DRAFT_04679: H281DRAFT_04679 - pyrroline-5-carboxylate reductase, at 82,715 to 83,530
_04679
H281DRAFT_04680: H281DRAFT_04680 - hypothetical protein, at 83,675 to 84,373
_04680
H281DRAFT_04681: H281DRAFT_04681 - glycolate oxidase iron-sulfur subunit, at 84,411 to 85,637
_04681
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 82.559 kb on - strand at 82.559 kb on - strand at 82.682 kb on + strand at 82.716 kb on + strand at 82.716 kb on + strand at 82.717 kb on - strand at 82.995 kb on + strand, within H281DRAFT_04679 at 82.996 kb on - strand, within H281DRAFT_04679 at 83.005 kb on - strand, within H281DRAFT_04679 at 83.066 kb on + strand, within H281DRAFT_04679 at 83.067 kb on - strand, within H281DRAFT_04679 at 83.203 kb on + strand, within H281DRAFT_04679 at 83.204 kb on - strand, within H281DRAFT_04679 at 83.349 kb on + strand, within H281DRAFT_04679 at 83.349 kb on + strand, within H281DRAFT_04679 at 83.349 kb on + strand, within H281DRAFT_04679 at 83.350 kb on - strand, within H281DRAFT_04679 at 83.350 kb on - strand, within H281DRAFT_04679 at 83.557 kb on + strand at 83.557 kb on + strand at 83.558 kb on - strand at 83.558 kb on - strand at 83.572 kb on - strand at 83.686 kb on - strand at 83.782 kb on + strand, within H281DRAFT_04680 at 84.202 kb on - strand, within H281DRAFT_04680 at 84.488 kb on + strand at 84.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 82,559 - -2.3 82,559 - -2.3 82,682 + +0.0 82,716 + -0.0 82,716 + -0.5 82,717 - +0.4 82,995 + H281DRAFT_04679 0.34 -0.1 82,996 - H281DRAFT_04679 0.34 -1.1 83,005 - H281DRAFT_04679 0.36 -2.9 83,066 + H281DRAFT_04679 0.43 -0.6 83,067 - H281DRAFT_04679 0.43 -3.2 83,203 + H281DRAFT_04679 0.60 -1.4 83,204 - H281DRAFT_04679 0.60 -0.6 83,349 + H281DRAFT_04679 0.78 -2.3 83,349 + H281DRAFT_04679 0.78 -2.3 83,349 + H281DRAFT_04679 0.78 +0.9 83,350 - H281DRAFT_04679 0.78 -0.9 83,350 - H281DRAFT_04679 0.78 +1.2 83,557 + -0.8 83,557 + -0.1 83,558 - -0.3 83,558 - -0.6 83,572 - +0.6 83,686 - +0.6 83,782 + H281DRAFT_04680 0.15 -3.0 84,202 - H281DRAFT_04680 0.75 +0.6 84,488 + -0.6 84,489 - +1.1
Or see this region's nucleotide sequence